CB611084

Overview
NameCB611084
Unique NameCB611084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RS2_PYRAE (30S ribosomal protein S2P OS=Pyrobaculum aerophilum GN=rps2p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.821e-27
Identity = 65/166 (39.16%), Postives = 97/166 (58.43%), Query Frame = 3
Query:  135 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            ++  L+A V LGT+  +  +E   ++F  R DG+ I ++ K  E+L++AA+ I A   P  ++V + RPYG + V  F K+    A+ GR  PGT TN     + E  LL + DP+ D Q + EAA   IP IA  DTD+P +Y+D  IP NNKG+  +  +FW+L
Sbjct:   13 LEKYLSAGVRLGTRLSNKYLEDRGFIFAVRPDGLRIFDIKKIDERLKIAAKFI-ARYRPERVLVHTTRPYGFKPVQMFCKFVGCKALTGRFIPGTLTNPNLPHYQEVDLLFVVDPKLDAQAVAEAAKMGIPVIALVDTDTPHQYIDFMIPCNNKGRKSLALIFWIL 177          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RS2_META3 (30S ribosomal protein S2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps2p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.505e-26
Identity = 59/160 (36.88%), Postives = 95/160 (59.38%), Query Frame = 3
Query:  147 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            LA+ +H+GT+     M+R++++ R DG+Y++++ KT E++ +AA+ +   E P +I+  S R Y    + KF + T     AGR  PGT TN     F EP +L L+DPR D Q +KEA    IP +  CDT+    ++D  IP NNKG+  +  +++L+
Sbjct:   14 LASGIHIGTQQKTEDMKRFIYRVRADGLYVLDVRKTDERIGLAAKFLSKYE-PEEILAVSRRIYSVGPLKKFGQTTGITTAAGRFVPGTLTNPSSRKFLEPEVLFLSDPRIDRQALKEAIEIGIPIVGMCDTEHLTSFIDFIIPTNNKGRKSVSLVYYLI 172          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_ENCCU (40S ribosomal protein S0 OS=Encephalitozoon cuniculi GN=RPS0 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 63/165 (38.18%), Postives = 98/165 (59.39%), Query Frame = 3
Query:  135 IQMMLAAEVHLGTKNCDFQMERYVFKRR-NDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            +++++ ++ HLG  + +    RY++  R  D I II++  TWEKL +AAR    I++P  I V S + +G++ V+KF +   A  I GR  PG+FTN       +PR+LI++D   D Q I E+   N+PTIAF +TD+ +  VDI IP NN+    I   F++L
Sbjct:   19 VKLLIVSQSHLGGTSTNKSFARYLYGTRPRDRINIIDINATWEKLIIAARAFCGIKHPSSIAVVSTKTFGRKPVVKFCEAVGATPITGRFIPGSFTNSEVKRVYDPRVLIVSDTYADKQAILESQYCNLPTIAFVNTDNSLVGVDIAIPMNNRSPSAIAAGFFIL 183          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RS2_PYRCJ (30S ribosomal protein S2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 62/166 (37.35%), Postives = 98/166 (59.04%), Query Frame = 3
Query:  135 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            ++  L+A V LGT+  +  +E   +++  R DG+ I ++ K  E+L++AA++I     P  ++V + RPYG + V  F K+    A+ GR  PG  TN   +++ E  LL + DPR D Q + EAA   IP +A  DTD+P +Y+D  IP NNKG+  +  +FW+L
Sbjct:   13 LEKYLSAGVRLGTRLSNKYLEERGFIYAVRPDGLRIFDIKKIDERLRIAAKLIARYP-PDRVLVHTTRPYGFKPVQMFCKFVGCKALTGRFIPGMLTNPNLSNYLEVDLLFVVDPRLDSQAVAEAAKMGIPVVALVDTDTPHQYIDFMIPCNNKGRKSLALIFWVL 177          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RS2_KORCO (30S ribosomal protein S2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps2p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25
Identity = 61/163 (37.42%), Postives = 95/163 (58.28%), Query Frame = 3
Query:  138 QMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            Q  L + VH+GT      ME+++++ R DG+ II++ K  E+++ A + +   + P  ++  SAR YG + V KFA+YT A  I GR  PGT TN       EP +++L+DPR D Q   E+    IP +A  D D+ +  +D+ IP NNKG+  +  ++WLL
Sbjct:   24 QKYLLSGVHVGTGIRTKDMEKFIYRVRPDGLCIIDIRKIDERIRTAGKFLARFD-PDRVLAVSARIYGFKPVRKFAEYTGAMYITGRILPGTLTNPQAPLHLEPDVVLLSDPRVDRQIHIESVRMGIPVVALVDADNMLENIDLAIPVNNKGRRSLALVYWLL 185          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RS2_NANEQ (30S ribosomal protein S2P OS=Nanoarchaeum equitans GN=rps2p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 55/164 (33.54%), Postives = 93/164 (56.71%), Query Frame = 3
Query:  135 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            I + + A +H+GT++    M+ YV K R DG+ I ++ K  E+L++A++++   E P +I+V   R      + KF++ T   A  GR+ PGT TN     + EP ++++TDP  D   + +A    I  +A CDT+    Y+D  IPANN+G   +  ++W+L
Sbjct:    7 INVYVKAGIHIGTRHLTKDMKPYVSKIREDGLAIFDIRKIDERLRLASKMLSYYE-PNEILVVGRRETAITPIKKFSEITKVKAFPGRYPPGTLTNPQLKYYMEPEVILITDPIMDKNALHDAYESGITILALCDTNHTKNYIDFCIPANNRGSKSLALIYWIL 169          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RS2_AERPE (30S ribosomal protein S2P OS=Aeropyrum pernix GN=rps2p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 60/158 (37.97%), Postives = 90/158 (56.96%), Query Frame = 3
Query:  153 AEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            A V  GT+ C   M ++V +   +G Y ++  K  E+L MAA+ +   E P  I V S R YGQ+ V    +     AI GR  PGTFTN     + EP ++++TDPR D Q + EA+   IP +A  DTD+ +  +D+ IPANN+G+  +  ++W+L
Sbjct:   18 AGVIYGTQICTRYMRQFVHRILPEGYYQLDYLKIDERLAMAAKFLSTFE-PEKIAVVSVRIYGQKPVRMMCERVGCKAITGRIIPGTFTNPNLEHYVEPDVVVVTDPRMDRQAVVEASKVGIPVVALVDTDNSIENIDLVIPANNRGRRSLALIYWIL 174          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RS2_NITMS (30S ribosomal protein S2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 54/163 (33.13%), Postives = 94/163 (57.67%), Query Frame = 3
Query:  144 MLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI--VAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            +L+  + +GT+     M  ++ K   +G+Y+++L  T +K++ AA+ I  + +EN   +IV S R Y +  + KF +   +  + GR  PGT TN     + EP+L++++DP+ D Q I EA    IP I   +TD+    +D+ IPANN+G+  +  ++WLL
Sbjct:   14 ILSTGIRVGTQVKTKFMRPFITKASPEGLYMLDLDITLDKIKTAAKFINRLGVEN---LIVCSGRQYAETPIEKFCETLGSKKLLGRFMPGTLTNPSLPYYIEPKLVLISDPQVDEQAITEATNAGIPVIGIANTDNITSNLDVIIPANNRGRKALATVYWLL 173          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RS2_CENSY (30S ribosomal protein S2P OS=Cenarchaeum symbiosum GN=rps2p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  141 MMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPG--DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            ++  + + +GT+     M++++      G Y ++L  T  +++ AA+ I   E+ G  ++IV S +   +  + KFA+      I  R  PGT TN     + EP+LL++ DP+ D Q + EA    IP I   ++D+    +D+ IPANN+G+  +  +FWLL
Sbjct:   15 LITTSGISIGTQVKTKFMKQFISDTDPTGTYTLDLEATQGRIKAAAQFI---EHTGASELIVCSGKDSARVPIRKFAELVGCKDIHKRFMPGTLTNPDLPKYMEPKLLLVCDPQVDAQAVTEATNAGIPVIGIANSDNVTSRLDVIIPANNRGRGALAAIFWLL 175          
The following BLAST results are available for this feature:
BLAST of CB611084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_PYRAE8.821e-2739.1630S ribosomal protein S2P OS=Pyrobaculum aerophilu... [more]
RS2_META31.505e-2636.8830S ribosomal protein S2P OS=Methanococcus aeolicu... [more]
RSSA_ENCCU1.965e-2638.1840S ribosomal protein S0 OS=Encephalitozoon cunicu... [more]
RS2_PYRCJ1.965e-2637.3530S ribosomal protein S2P OS=Pyrobaculum calidifon... [more]
RS2_KORCO1.274e-2537.4230S ribosomal protein S2P OS=Korarchaeum cryptofil... [more]
RS2_NANEQ3.137e-2433.5430S ribosomal protein S2P OS=Nanoarchaeum equitans... [more]
RS2_AERPE6.989e-2437.9730S ribosomal protein S2P OS=Aeropyrum pernix GN=r... [more]
RS2_NITMS3.247e-2133.1330S ribosomal protein S2P OS=Nitrosopumilus mariti... [more]
RS2_CENSY1.844e-1630.4930S ribosomal protein S2P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_B11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611084 ID=CB611084; Name=CB611084; organism=Citrus sinensis; type=EST; length=626bp
GCGGGATCACAGCCAGCGAGCAGAAGTCTCCGATGGTACCACGAGTCTCA
GCTTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAAC
GGCCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAG
CCGCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGT
TACGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAA
GACTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAA
ACCCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCT
GTGTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCA
CACTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCC
GACTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAA
GCTGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACC
TATGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACA
TCATTGGGTGTCTCTTCTGGCTTTTG
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