CB611084

Overview
NameCB611084
Unique NameCB611084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_NEOFI (40S ribosomal protein S0 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps0 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.692e-59
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++WLL
Sbjct:    7 PPMFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLL 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_NECH7 (40S ribosomal protein S0 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.692e-59
Identity = 105/174 (60.34%), Postives = 133/174 (76.44%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ ++N+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA  DTDSP  YVD+ IP NNKG+H IGC++W+L
Sbjct:    7 PSVFNATSQDIEMLLAAQCHLGSKNLQVHMENYLWKTRADGVNVLNVGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFASHTGATAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALTDTDSPTEYVDVAIPTNNKGRHAIGCVWWML 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_COCP7 (40S ribosomal protein S0 OS=Coccidioides posadasii (strain C735) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.692e-59
Identity = 109/174 (62.64%), Postives = 133/174 (76.44%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++WLL
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLL 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_COCIM (40S ribosomal protein S0 OS=Coccidioides immitis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.692e-59
Identity = 109/174 (62.64%), Postives = 133/174 (76.44%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++WLL
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLL 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_TALSN (40S ribosomal protein S0 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps0 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.740e-59
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++WLL
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVAVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLL 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_PLAKH (40S ribosomal protein SA OS=Plasmodium knowlesi (strain H) GN=PKH_061110 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.740e-59
Identity = 108/177 (61.02%), Postives = 135/177 (76.27%), Query Frame = 3
Query:   96 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            +T  +  S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++I+NL KT+EKLQ+AAR+IVAI NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD QP+KE+A  NIP IA CD+DSP+ +VDI IP NNKGK  I  ++WLL
Sbjct:    2 STNKKVQSPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHILNLAKTYEKLQLAARIIVAINNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQPVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLL 178          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_PENMQ (40S ribosomal protein S0 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps0 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.740e-59
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++WLL
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVAVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLL 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_NEUCR (40S ribosomal protein S0 OS=Neurospora crassa GN=rps-0 PE=3 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 8.740e-59
Identity = 106/177 (59.89%), Postives = 133/177 (75.14%), Query Frame = 3
Query:   96 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            A  P   +    DI+ +LAA+ H+G+KN    M+ Y++K R DG+ I+N+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CD DSP  YVD+ IP NNKG+H IGC++W+L
Sbjct:    4 ANLPSIFNATSTDIEQLLAAQCHIGSKNLGVHMQPYLWKTRADGVNILNVGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDADSPTEYVDVAIPTNNKGRHAIGCVWWML 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_PLAVI (40S ribosomal protein SA OS=Plasmodium vivax GN=PVX_111380 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.141e-58
Identity = 107/170 (62.94%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  117 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++I+NL KT+EKLQ+AAR+IVAI NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD QP+KE+A  NIP IA CD+DSP+ +VDI IP NNKGK  I  ++WLL
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHILNLAKTYEKLQLAARIIVAINNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQPVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLL 177          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_PARBP (40S ribosomal protein S0 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.141e-58
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++W+L
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWML 180          
The following BLAST results are available for this feature:
BLAST of CB611084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_NEOFI6.692e-5962.0740S ribosomal protein S0 OS=Neosartorya fischeri (... [more]
RSSA_NECH76.692e-5960.3440S ribosomal protein S0 OS=Nectria haematococca (... [more]
RSSA_COCP76.692e-5962.6440S ribosomal protein S0 OS=Coccidioides posadasii... [more]
RSSA_COCIM6.692e-5962.6440S ribosomal protein S0 OS=Coccidioides immitis G... [more]
RSSA_TALSN8.740e-5962.0740S ribosomal protein S0 OS=Talaromyces stipitatus... [more]
RSSA_PLAKH8.740e-5961.0240S ribosomal protein SA OS=Plasmodium knowlesi (s... [more]
RSSA_PENMQ8.740e-5962.0740S ribosomal protein S0 OS=Penicillium marneffei ... [more]
RSSA_NEUCR8.740e-5959.8940S ribosomal protein S0 OS=Neurospora crassa GN=r... [more]
RSSA_PLAVI1.141e-5862.9440S ribosomal protein SA OS=Plasmodium vivax GN=PV... [more]
RSSA_PARBP1.141e-5862.0740S ribosomal protein S0 OS=Paracoccidioides brasi... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_B11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611084 ID=CB611084; Name=CB611084; organism=Citrus sinensis; type=EST; length=626bp
GCGGGATCACAGCCAGCGAGCAGAAGTCTCCGATGGTACCACGAGTCTCA
GCTTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAAC
GGCCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAG
CCGCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGT
TACGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAA
GACTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAA
ACCCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCT
GTGTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCA
CACTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCC
GACTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAA
GCTGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACC
TATGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACA
TCATTGGGTGTCTCTTCTGGCTTTTG
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