CB611084

Overview
NameCB611084
Unique NameCB611084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_PARBD (40S ribosomal protein S0 OS=Paracoccidioides brasiliensis (strain Pb18) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.141e-58
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++W+L
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWML 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_PARBA (40S ribosomal protein S0 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.141e-58
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++W+L
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWML 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_ASPCL (40S ribosomal protein S0 OS=Aspergillus clavatus GN=rps0 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.141e-58
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++WLL
Sbjct:    7 PPMFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLVWWLL 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_UNCRE (40S ribosomal protein S0 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.491e-58
Identity = 108/174 (62.07%), Postives = 133/174 (76.44%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    D++M+LAA+ HLG+KN    M+ Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+H IG ++WLL
Sbjct:    7 PPVFNATSQDMEMLLAAQCHLGSKNLQVHMDPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHAIGLVWWLL 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_PHANO (40S ribosomal protein S0 OS=Phaeosphaeria nodorum GN=RPS0 PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.491e-58
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +  + DI+M+LAA+ HLG KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+IVAI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CD DSP  YVD+ IP NNKG+H IG ++W+L
Sbjct:    7 PAIFNPSQQDIEMLLAAQCHLGAKNLQVHMEPYLWKTRPDGVNVINVGKTWEKIVLAARIIVAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDGDSPTEYVDVAIPTNNKGRHAIGLVWWML 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_CULQU (40S ribosomal protein SA OS=Culex quinquefasciatus GN=CPIJ013899 PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.491e-58
Identity = 106/171 (61.99%), Postives = 133/171 (77.78%), Query Frame = 3
Query:  114 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            L+ K+ D+  MLAA  H+G+ + +FQME YVFKRR DG++IINLG+TWEKL +AAR I +IE PG++   S+R +GQRAVLKFA YT A  IAGR TPG FTNQ+Q +F EPRLLI+TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP N K  H IG ++WLL
Sbjct:    8 LALKDDDVNKMLAATTHVGSTSVNFQMESYVFKRRPDGVHIINLGRTWEKLLLAARCIASIEYPGEVFAISSRQFGQRAVLKFAHYTEATPIAGRFTPGAFTNQIQPAFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPLKFVDIAIPCNTKSPHSIGLMWWLL 178          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_ASPTN (40S ribosomal protein S0 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps0 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.491e-58
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++WLL
Sbjct:    7 PPMFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHSIGLVWWLL 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_ASPNC (40S ribosomal protein S0 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps0 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.491e-58
Identity = 111/179 (62.01%), Postives = 135/179 (75.42%), Query Frame = 3
Query:  102 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H IG ++WLL
Sbjct:    2 APSQLPPIFNPTSQDIEMLLAAQCHLGSKNLQSHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLVWWLL 180          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA2_SCHJY (40S ribosomal protein S0-B OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps0b PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.491e-58
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P  L+  E DI+ +LAA  H+G+KN D +ME YV+KRR DG+ IIN+GKTWEK+ +AARVI  IENP D+ V SARPYG RAVLKFA +T A AIAGR TPG FTN +  ++ EPRL+++TDPR DHQ IKEA+  NIP IA CDTDSP+ +VDI IP NNKG   IG ++WLL
Sbjct:    8 PSVLNATEEDIKQLLAASCHIGSKNLDVRMENYVWKRRADGVNIINIGKTWEKIVLAARVIATIENPADVCVISARPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADHQAIKEASYVNIPVIALCDTDSPLAHVDIAIPTNNKGYKSIGLVWWLL 181          
BLAST of CB611084 vs. ExPASy Swiss-Prot
Match: RSSA_PYRTR (40S ribosomal protein S0 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps0 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.947e-58
Identity = 107/174 (61.49%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  105 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLL 626
            P   +  + DI+M+LAA+ HLG KN    ME Y++K R DG+ ++N+GKTWEK+ +AAR+IVAI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CD DSP  YVD+ IP NNKG+H IG ++W+L
Sbjct:    7 PAIFNPTQQDIEMLLAAQCHLGAKNLQVHMEPYLWKTRPDGVNVLNIGKTWEKIVLAARIIVAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFREPRLVIVTDPRTDAQAIKEASYVNIPVIALCDGDSPTEYVDVAIPTNNKGRHAIGLVWWML 180          
The following BLAST results are available for this feature:
BLAST of CB611084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_PARBD1.141e-5862.0740S ribosomal protein S0 OS=Paracoccidioides brasi... [more]
RSSA_PARBA1.141e-5862.0740S ribosomal protein S0 OS=Paracoccidioides brasi... [more]
RSSA_ASPCL1.141e-5862.0740S ribosomal protein S0 OS=Aspergillus clavatus G... [more]
RSSA_UNCRE1.491e-5862.0740S ribosomal protein S0 OS=Uncinocarpus reesii (s... [more]
RSSA_PHANO1.491e-5862.0740S ribosomal protein S0 OS=Phaeosphaeria nodorum ... [more]
RSSA_CULQU1.491e-5861.9940S ribosomal protein SA OS=Culex quinquefasciatus... [more]
RSSA_ASPTN1.491e-5862.0740S ribosomal protein S0 OS=Aspergillus terreus (s... [more]
RSSA_ASPNC1.491e-5862.0140S ribosomal protein S0 OS=Aspergillus niger (str... [more]
RSSA2_SCHJY1.491e-5862.0740S ribosomal protein S0-B OS=Schizosaccharomyces ... [more]
RSSA_PYRTR1.947e-5861.4940S ribosomal protein S0 OS=Pyrenophora tritici-re... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_B11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611084 ID=CB611084; Name=CB611084; organism=Citrus sinensis; type=EST; length=626bp
GCGGGATCACAGCCAGCGAGCAGAAGTCTCCGATGGTACCACGAGTCTCA
GCTTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAAC
GGCCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAG
CCGCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGT
TACGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAA
GACTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAA
ACCCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCT
GTGTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCA
CACTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCC
GACTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAA
GCTGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACC
TATGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACA
TCATTGGGTGTCTCTTCTGGCTTTTG
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