CB611085

Overview
NameCB611085
Unique NameCB611085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.378e-39
Identity = 44/58 (75.86%), Postives = 55/58 (94.83%), Query Frame = 2
Query:  269 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 442
            G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:   87 GNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          

HSP 2 Score: 83.1889 bits (204), Expect = 5.378e-39
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 3
Query:   75 MSLIPSIF--GGRRTNVFDPFSLD-VWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFK 269
            MSLIP+ +   GRR+N+FDPFSLD +WDPF G L S L+  P S  A ET+ FANARIDWKETP+AHVFK
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFK 69          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.384e-39
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 2
Query:  266 QGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            + R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT            +IEISG
Sbjct:   78 EDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          

HSP 2 Score: 75.8702 bits (185), Expect = 5.384e-39
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTN-VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSLIP IFG RR++ +FDPFS+DV+DPF       L    +++ ETS FAN RIDWKETP+AHVFK
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPF-----RELGFPGTNSGETSAFANTRIDWKETPEAHVFK 61          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.191e-38
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 2
Query:  266 QGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            + R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT            +IEISG
Sbjct:   78 EDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          

HSP 2 Score: 73.1738 bits (178), Expect = 1.191e-38
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTN-VFDPFSLDVWDPFD--GFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSLIP IFG RR++ +FDPFS+DV+DPF   GF S+       ++ E+S FAN RIDWKETP+ HVFK
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPST-------NSGESSAFANTRIDWKETPEPHVFK 61          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.020e-38
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  269 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+ISG
Sbjct:   84 GNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          

HSP 2 Score: 69.707 bits (169), Expect = 2.020e-38
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 3
Query:  105 RRTNVFDPFSLDVWDPFDGF-------LSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            RR N FDPFSLD+WDP DGF        SS+ +  P +  + + FA ARIDWKETP+ HVFK
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFK 66          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.892e-38
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  275 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT            +I+ISG
Sbjct:   80 VLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          

HSP 2 Score: 82.4185 bits (202), Expect = 9.892e-38
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   75 MSLIPSIFGG-RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MS+IPS F   RR+N+FDPFSLDVWDPF    SS+L      +RE S   NAR+DW+ETP+AHVFK
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSL------SRENSAIVNARVDWRETPEAHVFK 60          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.079e-36
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  269 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT            AIEISG
Sbjct:   76 GNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          

HSP 2 Score: 67.0106 bits (162), Expect = 3.079e-36
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3
Query:  105 RRTNVFDPFSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            RR+NVFDPF+ D+W DPFD F S     +  S+ ET+ FANAR+DWKETP+AHVFK
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS-ETAAFANARVDWKETPEAHVFK 58          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.344e-35
Identity = 50/74 (67.57%), Postives = 61/74 (82.43%), Query Frame = 2
Query:  272 RILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEIS 493
            R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT            +IEIS
Sbjct:   69 RVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          

HSP 2 Score: 65.4698 bits (158), Expect = 4.344e-35
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 3
Query:  123 DPFSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            DPFSLDVWDPF  F  +++  +A S  +E S F + RIDWKETP+AHVFK
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFK 50          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.352e-35
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 2
Query:  269 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            G +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT            AI+ISG
Sbjct:   76 GNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          

HSP 2 Score: 67.3958 bits (163), Expect = 7.352e-35
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  105 RRTNVFDPFSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            RRTNVFDPF+ D+W DPFD F  S +        ET+ FANAR+DWKETP+AHVFK
Sbjct:    5 RRTNVFDPFA-DLWADPFDTF-RSIVPAISGGGSETAAFANARMDWKETPEAHVFK 58          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.344e-33
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 2
Query:  275 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 442
            +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:   82 VLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          

HSP 2 Score: 74.7146 bits (182), Expect = 1.344e-33
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 3
Query:   75 MSLIPSIFGGRR--TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSLIPS FG  R   ++FDPFSLDVWDPF       L    S + ETS   NAR+DWKET +AHVFK
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPF-----KELQFPSSLSGETSAITNARVDWKETAEAHVFK 62          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.282e-33
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  275 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 442
            +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:   80 VLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          

HSP 2 Score: 73.9442 bits (180), Expect = 2.282e-33
Identity = 40/68 (58.82%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   75 MSLIPSIFGGRR---TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSLIPS FG  R    N+FDPFSLDVWDPF           PSS+  +S  ANAR+DWKET +AHVFK
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKEL------QFPSSS--SSAIANARVDWKETAEAHVFK 60          
The following BLAST results are available for this feature:
BLAST of CB611085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
HSP11_CHERU5.378e-3975.8618.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP11_SOLPE5.384e-3967.5317.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC1.191e-3867.5317.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS177_ORYSJ2.020e-3872.3717.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17B_ARATH9.892e-3862.1617.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16A_WHEAT3.079e-3667.1116.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_MEDSA4.344e-3567.5718.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16B_WHEAT7.352e-3564.4716.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS178_ARATH1.344e-3373.2117.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH2.282e-3375.0017.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_B12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611085 ID=CB611085; Name=CB611085; organism=Citrus sinensis; type=EST; length=608bp
GGGGATCTTCGAATTGCTTGATCAAAACACTTCTGAAGTTGTTGAGCATT
TAATTAGCGCCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCATGTATTCAAGGCAGGATTCTGCAGATAAGCGGGGAGAGGAG
CAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCA
GTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAG
CAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACTGTTCCTAA
ACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAAG
TGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATAAATT
TGGTACCAAAGCAAAGCCCTTGTGTGTGTGTGGGAGTGTTTGCAAGAGGT
TCACTTCC
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