CB611085

Overview
NameCB611085
Unique NameCB611085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.963e-23
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  269 GRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT            AI ISG
Sbjct:   72 GGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          

HSP 2 Score: 45.4394 bits (106), Expect = 7.963e-23
Identity = 24/54 (44.44%), Postives = 27/54 (50.00%), Query Frame = 3
Query:  105 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVF 266
            R  NV DP S+D W   D F +       S A       N R+DWKETP AHVF
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVF 53          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  275 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.849e-19
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 2
Query:  266 QGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 442
            + R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   98 ENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          

HSP 2 Score: 29.6462 bits (65), Expect = 7.849e-19
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  225 ARIDWKETPQAHV 263
            AR+DWKETP+ HV
Sbjct:   67 ARVDWKETPEGHV 79          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.020e-18
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 2
Query:  266 QGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 442
            + R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:  106 ENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          

HSP 2 Score: 30.4166 bits (67), Expect = 1.020e-18
Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  219 ANARIDWKETPQAHV 263
            ++AR+DWKETP+ HV
Sbjct:   73 SHARVDWKETPEGHV 87          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.332e-18
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  272 RILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 442
            ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:  103 KVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          

HSP 2 Score: 40.817 bits (94), Expect = 1.332e-18
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 3
Query:   99 GGRRTNVFDPFSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVF 266
            GG      +P S+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVF 83          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.030e-17
Identity = 35/55 (63.64%), Postives = 47/55 (85.45%), Query Frame = 2
Query:  275 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 439
            +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:  105 VLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          

HSP 2 Score: 25.7942 bits (55), Expect = 4.030e-17
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  201 RETS-QFANARIDWKETPQAH 260
            R+TS   + AR+DWKET + H
Sbjct:   62 RDTSVALSPARVDWKETAEGH 82          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.547e-16
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  266 QGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 442
            +G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:   73 EGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          

HSP 2 Score: 40.0466 bits (92), Expect = 2.547e-16
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 3
Query:  117 VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            +FD  + D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFR 55          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.765e-13
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  272 RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 442
            R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:  106 RVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          

HSP 2 Score: 33.8834 bits (76), Expect = 1.765e-13
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  186 APSSARETSQFANARIDWKETPQAHV 263
            A ++A E +  A AR DWKETP+AHV
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHV 84          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.427e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  272 RILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 439
            R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:  109 RVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          

HSP 2 Score: 25.0238 bits (53), Expect = 1.427e-12
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  204 ETSQFANARIDWKETPQAH 260
            + +  + AR+DW+ET  AH
Sbjct:   69 DVAMLSMARVDWRETGDAH 87          
BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.415e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  266 QGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 439
            +G +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   53 EGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          

HSP 2 Score: 23.8682 bits (50), Expect = 7.415e-11
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  219 ANARIDWKETPQAHVFK 269
            + A IDW E+  +H+FK
Sbjct:   20 STALIDWMESNNSHIFK 36          
The following BLAST results are available for this feature:
BLAST of CB611085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
HS166_ORYSJ7.963e-2358.2316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP12_SOYBN1.255e-2272.97Class I heat shock protein (Fragment) OS=Glycine m... [more]
HSP41_SOYBN7.849e-1962.7122.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA1.020e-1861.0222.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS189_ORYSJ1.332e-1854.3918.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH4.030e-1763.6422.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS17B_ORYSJ2.547e-1652.5417.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS219_ORYSJ1.765e-1348.4421.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ1.427e-1256.6723.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH7.415e-1150.7915.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_B12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611085 ID=CB611085; Name=CB611085; organism=Citrus sinensis; type=EST; length=608bp
GGGGATCTTCGAATTGCTTGATCAAAACACTTCTGAAGTTGTTGAGCATT
TAATTAGCGCCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCATGTATTCAAGGCAGGATTCTGCAGATAAGCGGGGAGAGGAG
CAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCA
GTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAG
CAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACTGTTCCTAA
ACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAAG
TGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATAAATT
TGGTACCAAAGCAAAGCCCTTGTGTGTGTGTGGGAGTGTTTGCAAGAGGT
TCACTTCC
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