CB611093

Overview
NameCB611093
Unique NameCB611093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEI-IYKGAHNRPKPPPNRRSAIG 617
            EDGY WRKYGQK VK S +PRSYY+CT  +C VKK+VERS     T +  Y+G H    P  +R  + G
Sbjct:  174 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSRPISTG 242          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEII-YKGAH 575
            +DGY WRKYGQK +K S  PRSYYKCT+P C  KK+VERS++   T II Y+G H
Sbjct:  114 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDESNTYIITYEGFH 168          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRKY1_DICDI (Probable WRKY transcription factor protein 1 OS=Dictyostelium discoideum GN=wrky1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 3
Query:  417 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKPPPNR 602
            DGY WRKYGQK VKGS +PR YYKCT   C V+K+VER  +      +YKG H    P   R
Sbjct:  815 DGYQWRKYGQKNVKGSLHPRHYYKCTFQGCNVRKQVERIGDTNQNSTVYKGEHCHGFPQTTR 876          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEI-IYKGAHNRPKP 590
            +DGY WRKYGQK VK S +PR+YY+CT   C VKK+VERS     + I  Y+G H  P+P
Sbjct:  118 DDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHPRP 177          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  321 HSPPLDEQQDEEGDQ-------RGSGDSMVAGAGGASSE---DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVER-SLEGRLTEIIYKGAHNRP 584
            H+PPL  + D+ G++       R      +A    +  +   DGY WRKYGQK VK + +PRSYY+CT+  C VKK+V+R + +  +    Y+G HN P
Sbjct:   57 HAPPLPPENDQIGEKGKELKEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHP 155          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVER-SLEGRLTEIIYKGAHNRP 584
            +DGY WRKYGQK VK +++PRSYY+CT+  C VKK+V+R +++  +    Y+G H+ P
Sbjct:   67 DDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHP 124          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK59_ARATH (Probable WRKY transcription factor 59 OS=Arabidopsis thaliana GN=WRKY59 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEG-RLTEIIYKGAHNRPKP 590
            +DGY WRKYG+K + GS +PR Y+KC+ P+C VKKK+ER           Y+G HN P P
Sbjct:  109 DDGYKWRKYGKKPITGSPFPRHYHKCSSPDCNVKKKIERDTNNPDYILTTYEGRHNHPSP 168          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  243 TTEKDNGCNTILADQRVFDTFGGSTEHSPP----LDEQQDEEGDQRGSGDSMVAGAGGASSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEG-RLTEIIYKGAH 575
            T+  +N   T  + +   +    S E +PP    + E++  +   R    + +  +   + EDGY WRKYGQK VK S +PRSYY+CT+  C VKK+VERS +   +    Y+G H
Sbjct:   86 TSTNNNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQH 201          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVER-SLEGRLTEIIYKGAHNRP 584
            +DGY WRKYGQK VK + +PRSYY+CT+  C VKK+V+R + +  +    Y+G HN P
Sbjct:  114 DDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHP 171          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.984e-12
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 3
Query:  309 GSTEHSPPLDEQQDEEGDQRGSGDSMVAGAGGASSEDGYNWRKYGQKQVKGSEYPRSYYKCTHP-NCQVKKKVERSLEGRLTEI-IYKGAHNRPKPP 593
            GS   S  + EQ   E   R +  S+ A +      DG  WRKYGQK  KG+  PR+YY+CT    C V+K+V+R  E R   I  Y+G HN P PP
Sbjct:  257 GSENASSKVIEQAAAEATMRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 353          
The following BLAST results are available for this feature:
BLAST of CB611093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
WRK23_ARATH1.582e-1352.17Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK49_ARATH3.525e-1361.82Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRKY1_DICDI1.026e-1253.23Probable WRKY transcription factor protein 1 OS=Di... [more]
WRK68_ARATH1.026e-1255.00Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK24_ARATH1.026e-1238.38Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK75_ARATH2.285e-1250.00Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK59_ARATH2.285e-1250.00Probable WRKY transcription factor 59 OS=Arabidops... [more]
WRK57_ARATH2.285e-1235.34Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK56_ARATH2.285e-1251.72Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRK42_ARATH2.984e-1242.27Probable WRKY transcription factor 42 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_C10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611093 ID=CB611093; Name=CB611093; organism=Citrus sinensis; type=EST; length=652bp
GGGCAGAGGCCCCTGATAAAAGCAAGGATAACATCTTGGAGGACATCAAT
ACATCATTTGCATTTAAGCCTGTTGCAGAATCAGGTTCTTTTTCCCTTGG
TACAAGAAATAAGCAGTCCTCTCCTAGTATTGAGGTTTCTGTTCAGTCTG
AGAATTCCCCCCAAAATGTAAATGCAGCCAAAGTCCATTCTCAATACAGA
AACAGCCTCAGCCTCCAAGTCCAAACAGACTTCTCCAGAGCAACAACTGA
AAAGGATAATGGGTGTAATACCATCTTGGCTGATCAAAGGGTCTTTGATA
CTTTTGGTGGCAGTACTGAACATTCTCCACCTCTTGATGAGCAACAGGAT
GAAGAAGGAGATCAAAGAGGCAGTGGAGATTCCATGGTTGCTGGTGCTGG
AGGTGCATCATCTGAAGATGGATATAATTGGAGAAAATATGGACAAAAAC
AGGTGAAGGGTAGTGAGTATCCGCGTAGTTATTACAAGTGCACACATCCA
AACTGTCAGGTTAAGAAGAAAGTGGAGAGATCTCTTGAAGGCCGATTAAC
TGAGATCATATACAAAGGAGCTCATAATCGCCCCAAGCCTCCACCCAATC
GCCGATCAGCCATTGGGTCTAACCCTCTTGACATGCAATTAGACATTCAT
GA
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