CB611133

Overview
NameCB611133
Unique NameCB611133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611133 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 49/152 (32.24%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   91 KEKKWPIEESYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ-QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 543
            K +   IE++ +LS+LC++ +A+++ S  GKLY+  S  +M K ++RY+         +    EAL+L+ + + YL LK   E L+  Q  L    +   +   L SLE QL+ +L   R+ +T+ M+  +  LQ  E LL E N+TL  ++
Sbjct:   23 KRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE-------IHHADELEALDLAEKTRNYLPLK---ELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQV 164          
BLAST of CB611133 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 51/172 (29.65%), Postives = 92/172 (53.49%), Query Frame = 1
Query:   91 KEKKWPIEESYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY--QKCNYGAPEPNVS----------------AREALELSSQQEYLKLKARYEALQRSQ---RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 543
            K ++   +++ EL+VLCDA+VAL++FS+ GKL +F +SS+M + +++Y     N G  +   S                +   + L  Q E+ K  +  E L  +    R + GEEL  L+ +EL+ +E+ L+  L+++  T+ Q  +  ++ELQ K   L+E N  L+ ++
Sbjct:   23 KRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQF-ASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQM 193          
BLAST of CB611133 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 50/188 (26.60%), Postives = 96/188 (51.06%), Query Frame = 1
Query:   91 KEKKWPIEESYELSVLCDAEVALIIFSNRGKLYEFCSSSSML-KTLERYQKCN----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL-----KQRLMEGYQVNTLQLNPSAEDCGYGLKPAQP 624
            K +   ++++ E++VLCDA+VALIIF++ GK+ ++C  S  L   L++YQK +    + A   N+S           E  ++K   ++LQ   R+L GE++  LN K L ++E  ++  L ++R     + ++ L   +  E++++E  + L     +Q +        + +       GY ++P QP
Sbjct:   23 KRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLS----------NEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVR----DHQMEILISKRRNEKMMAEEQRQLTFQLQQQEMAIASNARGMMMRDHDGQFGYRVQPIQP 196          
BLAST of CB611133 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 54/153 (35.29%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   91 KEKKWPIEESYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLS-EANKTLKQRL 543
            K +   ++++ EL+VLCDA+VA+I+FS+ GK +EFCS S+ +K + +RYQ+          S       + Q+    LK     L+   R  +GE+L  L   EL  LE+ +D +LK++R  R  +++ T TE   K+   S EA +TL+Q L
Sbjct:   23 KRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA------IGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRH-RKYHVITTQTETYKKKVKHSYEAYETLQQEL 168          
BLAST of CB611133 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 53/180 (29.44%), Postives = 90/180 (50.00%), Query Frame = 1
Query:   91 KEKKWPIEESYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERYQ----KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKP 615
            K +   ++++ E+SVLCDAEV ++IFS+ GKLY++CS  +S+ + LE+YQ    K  +     ++SA          E  ++K   + +Q   R+L GE+L  L  KEL  +E  LD  +  +       ++D        +++L + NK L  +L +      + L+ S  D   G  P
Sbjct:   23 KRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSA----------EIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK----LMDHWERHVRTDKMLEDENKLLAFKLHQ----QDIALSGSMRDLELGYHP 184          
BLAST of CB611133 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 47/148 (31.76%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   91 KEKKWPIEESYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 531
            K +    +++ EL+VLCDA+V++I+ S+ GKL+EF S S   K L + YQK         V    +     Q++  KLK     L++  R  +GE L  LN ++LE L   +D SLK IR  + + + + +   + K + + E ++ L
Sbjct:   23 KRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQK------TVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNL 164          
The following BLAST results are available for this feature:
BLAST of CB611133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
AGL31_ARATH6.015e-1332.24Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MAD55_ORYSJ1.026e-1229.65MADS-box transcription factor 55 OS=Oryza sativa s... [more]
PIST_ARATH1.750e-1226.60Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD16_ORYSJ2.286e-1235.29MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MADS2_ORYSJ3.899e-1229.44MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MADS1_PETHY9.603e-1131.76Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_E10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611133 ID=CB611133; Name=CB611133; organism=Citrus sinensis; type=EST; length=755bp
GGGGAAGAAAGAAAGGACGAATAAAATGGGAAGGGGTAGGGTTGAGGATC
AGAGGATAGACAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGA
AATGGCCTATTGAAGAAAGCTATGAGCTTTCCGTTCTTTGTGATGCTGAG
GTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAG
TAGTTCAAGCATGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATG
GAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGC
CAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATC
CCAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGC
TTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCA
ACAAGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGA
ACAGTTGCTGAGCGAAGCAAATAAGACTCTCAAACAAAGGTTGATGGAGG
GATACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGT
TATGGGCTTAAACCAGCTCAACCTCAGGGCGATACCTTCTTTCACGCCTT
GGAATGTGAACCCACATTGCAAATTGGATACCAGCCTGCGGACCCAATAT
CGGTTGTCACAGCAGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTA
CCATG
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