CB611162

Overview
NameCB611162
Unique NameCB611162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_TOBAC (30S ribosomal protein S11, chloroplastic OS=Nicotiana tabacum GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_SPIOL (30S ribosomal protein S11, chloroplastic OS=Spinacia oleracea GN=rps11 PE=1 SV=4)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 85/104 (81.73%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRV+SW+SA            PFAAQTAAGNAIR V +QGMQRA+VMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_SOLTU (30S ribosomal protein S11, chloroplastic OS=Solanum tuberosum GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_SOLLC (30S ribosomal protein S11, chloroplastic OS=Solanum lycopersicum GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_SOLBU (30S ribosomal protein S11, chloroplastic OS=Solanum bulbocastanum GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_NICSY (30S ribosomal protein S11, chloroplastic OS=Nicotiana sylvestris GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_ATRBE (30S ribosomal protein S11, chloroplastic OS=Atropa belladonna GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_CERDE (30S ribosomal protein S11, chloroplastic OS=Ceratophyllum demersum GN=rps11 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.567e-41
Identity = 85/104 (81.73%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRG+V+SWSSA            PFAAQTAA NAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGQVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_NICTO (30S ribosomal protein S11, chloroplastic OS=Nicotiana tomentosiformis GN=rps11 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.047e-41
Identity = 85/104 (81.73%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTA  NAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAVANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_LIRTU (30S ribosomal protein S11, chloroplastic OS=Liriodendron tulipifera GN=rps11 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.047e-41
Identity = 85/104 (81.73%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDV G+V+SWSSA            PFAAQTAAGNAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVLGQVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
The following BLAST results are available for this feature:
BLAST of CB611162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_TOBAC7.036e-4282.6930S ribosomal protein S11, chloroplastic OS=Nicoti... [more]
RR11_SPIOL7.036e-4281.7330S ribosomal protein S11, chloroplastic OS=Spinac... [more]
RR11_SOLTU7.036e-4282.6930S ribosomal protein S11, chloroplastic OS=Solanu... [more]
RR11_SOLLC7.036e-4282.6930S ribosomal protein S11, chloroplastic OS=Solanu... [more]
RR11_SOLBU7.036e-4282.6930S ribosomal protein S11, chloroplastic OS=Solanu... [more]
RR11_NICSY7.036e-4282.6930S ribosomal protein S11, chloroplastic OS=Nicoti... [more]
RR11_ATRBE7.036e-4282.6930S ribosomal protein S11, chloroplastic OS=Atropa... [more]
RR11_CERDE1.567e-4181.7330S ribosomal protein S11, chloroplastic OS=Cerato... [more]
RR11_NICTO2.047e-4181.7330S ribosomal protein S11, chloroplastic OS=Nicoti... [more]
RR11_LIRTU2.047e-4181.7330S ribosomal protein S11, chloroplastic OS=Liriod... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_C08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611162 ID=CB611162; Name=CB611162; organism=Citrus sinensis; type=EST; length=540bp
GGGTTATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTGA
TGTAGGCCGCGACGGATCGGTTCACGTAAAAGTGGACGTCGGATACCAAA
GGGCGTTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTA
CAGATGTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGA
TTCAGGGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGG
AAATGCTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAAAAGTCA
TGATAAAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAGCTATTCGT
AGAAGCGGTATCCTTTTAAATTTCGTACGGGATGTAACCCCTATGCCACA
CAATGGTTGCAGACCCCCTAAAAAAAGACGGGTGTAGAAATAAACATTGA
AGAGATTTCAAGAGAAATAAATGACTCAATGATCTGACAAATAATATTAC
TATGGTTCAAGACAAAGTAAAAGTATCTACTCGGACACTA
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