CB611166 | Citrus Genome Database

Overview


Name	CB611166
Unique Name	CB611166
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	631

Libraries


Library Name	Type
Mature Albedo	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HSP70_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=hsp70 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.496e-66
Identity = 82/108 (75.93%), Postives = 90/108 (83.33%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            P NTVFDAKRLIGRRF DA VQ DMK WPFKV+   + KP+I V +KGE KQF  EEISSMVL KMRE AEA+LG T+ NAV+TVPAYFNDSQRQATKDAG+IAGLNV
Sbjct:   61 PHNTVFDAKRLIGRRFGDAEVQADMKHWPFKVV-DKSGKPIIEVEFKGETKQFTPEEISSMVLTKMRETAEAFLGGTVNNAVITVPAYFNDSQRQATKDAGLIAGLNV 167

HSP 2 Score: 111.309 bits (277), Expect = 1.496e-66
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 1

Query:  133 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNP 309
            PA+GIDLGTTYSCVGV++ DR++IIANDQGNRTTPS+V FTDTERLIGDAAKNQVAMNP
Sbjct:    3 PAVGIDLGTTYSCVGVFRDDRIDIIANDQGNRTTPSFVAFTDTERLIGDAAKNQVAMNP 61

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 1.496e-66
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            P NTVFDAKRLIGR+F DA VQ DMK WPF+V+    DKP + VNYKGE + F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV
Sbjct:   63 PQNTVFDAKRLIGRKFGDAVVQSDMKHWPFQVV-NDGDKPKVQVNYKGESRSFFPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 169

HSP 2 Score: 112.464 bits (280), Expect = 1.496e-66
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1

Query:  136 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPR 312
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQ 64

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.496e-66
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            P NTVFDAKRLIGR+F DA VQ DMK WPF+V+    DKP + VNYKGE + F  EEISSMVL KM+EIAEAYLG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV
Sbjct:   63 PQNTVFDAKRLIGRKFGDAVVQSDMKHWPFQVV-NDGDKPKVQVNYKGESRSFFPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 169

HSP 2 Score: 112.464 bits (280), Expect = 1.496e-66
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1

Query:  136 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPR 312
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVA+NP+
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQ 64

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.496e-66
Identity = 80/108 (74.07%), Postives = 90/108 (83.33%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            P NTVFDAKRLIGR+F+D  VQ DMKLWPF+VI     KP + V+YKGE+K F  EEISSMVL KM+E AEA+LG T+ NAV+TVPAYFNDSQRQATKDAGVIAGLNV
Sbjct:   65 PQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVI-NEGGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGYTVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 171

HSP 2 Score: 115.931 bits (289), Expect = 1.496e-66
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1

Query:  127 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPR 312
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP+
Sbjct:    5 KGTAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQ 66

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.496e-66
Identity = 80/108 (74.07%), Postives = 90/108 (83.33%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            P NTVFDAKRLIGR+F+D  VQ DMKLWPF+VI     KP + V+YKGE+K F  EEISSMVL KM+E AEA+LG T+ NAV+TVPAYFNDSQRQATKDAGVIAGLNV
Sbjct:   65 PQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVI-NEGGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGYTVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 171

HSP 2 Score: 115.931 bits (289), Expect = 1.496e-66
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1

Query:  127 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPR 312
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP+
Sbjct:    5 KGTAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQ 66

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HSP70_LEIMA (Heat shock 70 kDa protein (Fragment) OS=Leishmania major GN=HSP70 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.498e-66
Identity = 80/108 (74.07%), Postives = 88/108 (81.48%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            P NTVFDAKRLIGR+F+D+ VQ DMK WPFKV     DKP+I V Y+GEEK F  EEISSMVL+KM+E AEAYLG  +K AVVTVPAYFNDSQRQATKDAG IAGL V
Sbjct:   63 PHNTVFDAKRLIGRKFNDSVVQSDMKHWPFKVTTKGDDKPVISVQYRGEEKTFTPEEISSMVLLKMKETAEAYLGKQVKKAVVTVPAYFNDSQRQATKDAGTIAGLEV 170

HSP 2 Score: 112.849 bits (281), Expect = 1.498e-66
Identity = 52/58 (89.66%), Postives = 57/58 (98.28%), Query Frame = 1

Query:  136 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNP 309
            AIGIDLGTTYSCVGVWQ++R++IIANDQGNRTTPSYV FTD+ERLIGDAAKNQVAMNP
Sbjct:    6 AIGIDLGTTYSCVGVWQNERLDIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNP 63

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.951e-66
Identity = 80/108 (74.07%), Postives = 89/108 (82.41%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            P NTVFDAKRLIGR+F D +VQ DMK WPFKVI+    KP + V YKGE K F  EEISSMVL+KM+E AEA+LG T+K+AVVTVPAYFNDSQRQATKDAG IAGLNV
Sbjct:   63 PHNTVFDAKRLIGRKFDDPAVQSDMKHWPFKVISAEGAKPKVQVEYKGENKIFTPEEISSMVLLKMKETAEAFLGTTVKDAVVTVPAYFNDSQRQATKDAGAIAGLNV 170

HSP 2 Score: 110.923 bits (276), Expect = 1.951e-66
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1

Query:  136 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNP 309
            A+GIDLGTTYSCVGV+ H +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP
Sbjct:    6 AVGIDLGTTYSCVGVFMHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 63

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.951e-66
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            PTNT+FDAKRLIGR++ D +VQ DMK WPF+V+     KP + V YKGE K F  EEISSMVL KM+EIAEAYLG  ++ AV+TVPAYFNDSQRQATKDAG I GLNV
Sbjct:   64 PTNTIFDAKRLIGRKYDDPTVQSDMKHWPFRVV-NEGGKPKVQVEYKGEMKTFFPEEISSMVLTKMKEIAEAYLGKKVETAVITVPAYFNDSQRQATKDAGTITGLNV 170

HSP 2 Score: 120.939 bits (302), Expect = 1.951e-66
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 1

Query:  124 GEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNP 309
            G+GPAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP
Sbjct:    3 GKGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 64

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.544e-66
Identity = 80/108 (74.07%), Postives = 91/108 (84.26%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            P NTVFDAKRLIGR+F+D  VQ DMKLWPF+VI   A KP + V+YKGE+K F  EEISSMVL KM+E AEA+LG ++ NAV+TVPAYFNDSQRQATKDAGVIAGLNV
Sbjct:   65 PQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVI-NEAGKPKVLVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHSVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 171

HSP 2 Score: 115.546 bits (288), Expect = 2.544e-66
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1

Query:  127 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPR 312
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP+
Sbjct:    5 KGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQ 66

[Close]

BLAST of CB611166 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 157.147 bits (396), Expect = 2.544e-66
Identity = 80/108 (74.07%), Postives = 90/108 (83.33%), Query Frame = 3

Query:  306 PTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 629
            P NTVFDAKRLIGR+F+D  VQ DMKLWPF+VI   A KP + V+YKGE+K F  EEISSMVL KM+E AEA+LG  + NAV+TVPAYFNDSQRQATKDAGVIAGLNV
Sbjct:   65 PQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVI-NEAGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHNVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 171

HSP 2 Score: 115.546 bits (288), Expect = 2.544e-66
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1

Query:  127 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPR 312
            +G AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYV FTDTERLIGDAAKNQVAMNP+
Sbjct:    5 KGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQ 66

The following BLAST results are available for this feature:

BLAST of CB611166 vs. ExPASy Swiss-Prot

BLAST of CB611166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP70_EMENI	1.496e-66	75.93	Heat shock 70 kDa protein OS=Emericella nidulans G...	[more]
HS71B_MOUSE	1.496e-66	75.00	Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs...	[more]
HS71A_MOUSE	1.496e-66	75.00	Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs...	[more]
HS71L_PIG	1.496e-66	74.07	Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=...	[more]
HS71L_BOVIN	1.496e-66	74.07	Heat shock 70 kDa protein 1-like OS=Bos taurus GN=...	[more]
HSP70_LEIMA	1.498e-66	74.07	Heat shock 70 kDa protein (Fragment) OS=Leishmania...	[more]
HSP7A_CAEEL	1.951e-66	74.07	Heat shock 70 kDa protein A OS=Caenorhabditis eleg...	[more]
HSP70_CHICK	1.951e-66	69.44	Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV...	[more]
HS71L_RAT	2.544e-66	74.07	Heat shock 70 kDa protein 1-like OS=Rattus norvegi...	[more]
HS71L_MOUSE	2.544e-66	74.07	Heat shock 70 kDa protein 1-like OS=Mus musculus G...	[more]

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Properties


Property Name	Value
Genbank description	ALBEDO0001_IIaF_A03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_A03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB611166 ID=CB611166; Name=CB611166; organism=Citrus sinensis; type=EST; length=631bp
GGGAGAACCACATACAACTTTTTTATTTTTTAGATTTGAGATCTATTTTT
GTTTTTCTTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTT
GAGTTTTGATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGAT
TTGGGGACGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGA
GATTATCGCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGT
TCACCGACACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCC
ATGAACCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTGGTAGGAGA
TTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGT
GATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCG
AAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAG
ATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGT
CGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGG
ATGCCGGTGTCATTGCTGGGCTTAATGTGAT