CB611180

Overview
NameCB611180
Unique NameCB611180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H41_EMENI (Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 3
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT+LDVVYAL   G+
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96          
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_CANGA (Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.708e-29
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 3
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA+RKTVT+LDVVYAL   G+
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96          
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_ARXAD (Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.708e-29
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 3
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            +LRDNIQGITKPAIRRLARRGGVKRIS LIYEETR VLK FLE+VIRDAVTYTEHA+RKTVT+LDVVYAL   G+
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISALIYEETRSVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96          
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_YEAST (Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.032e-29
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 3
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRD+VTYTEHA+RKTVT+LDVVYAL   G+
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 96          
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H41_ASHGO (Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 6.032e-29
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 3
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYE+ R VLK FLE+VIRDAVTYTEHA+RKTVT+LDVVYAL   G+
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEDVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96          
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 7.878e-29
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 3
Query:  171 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLG 392
            V+R+NIQGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLENV+RDAVTYTEHARRKTVTALDVVYAL   G
Sbjct:   24 VIRENIQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H42_ASHGO (Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 2.534e-27
Identity = 61/75 (81.33%), Postives = 67/75 (89.33%), Query Frame = 3
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            +LRDNIQGITKPAI RLARRGGVKRISGLIYE+ R VLK  LE+VIRDAVTYTEHA+RKTVT+LDVVYAL   G+
Sbjct:   22 ILRDNIQGITKPAILRLARRGGVKRISGLIYEDVRAVLKSVLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96          
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_STYLE (Histone H4 OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  174 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTALDVVYAL   G+
Sbjct:   24 LKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGR 97          
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_OXYNO (Histone H4 OS=Oxytricha nova PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.646e-27
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  174 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTALDVVYAL   G+
Sbjct:   24 LKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGR 97          
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.258e-26
Identity = 59/75 (78.67%), Postives = 69/75 (92.00%), Query Frame = 3
Query:  171 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLG 392
            V+R+N QGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTALDVVYAL   G
Sbjct:   15 VIRENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
The following BLAST results are available for this feature:
BLAST of CB611180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H41_EMENI1.215e-2985.33Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 S... [more]
H4_CANGA2.708e-2985.33Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3[more]
H4_ARXAD2.708e-2985.33Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 S... [more]
H4_YEAST6.032e-2984.00Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=... [more]
H41_ASHGO6.032e-2984.00Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3[more]
H41_BLEJA7.878e-2984.00Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H42_ASHGO2.534e-2781.33Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3[more]
H4_STYLE5.646e-2781.08Histone H4 OS=Stylonychia lemnae PE=3 SV=2[more]
H4_OXYNO5.646e-2781.08Histone H4 OS=Oxytricha nova PE=3 SV=2[more]
H42_BLEJA1.258e-2678.67Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_H02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611180 ID=CB611180; Name=CB611180; organism=Citrus sinensis; type=EST; length=422bp
GCGGGGACTACAAAAAAACCGAGCAAAGGATGAGAGTGGGGGAAAAAAGA
AAGAAAAATTCCCAACTAGTTTGAAAACCGTAATTAGCATTTTAATTTCG
TAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAG
GAGCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACC
AAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAG
CGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTTTTGGAGA
ACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACG
GTGACCGCTTTGGATGTCGTTTATGCGCTCAATATGTTAGGGCAGGACTC
TCTATGGGTGATGGATTNGATG
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