CB611249

Overview
NameCB611249
Unique NameCB611249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.843e-51
Identity = 103/176 (58.52%), Postives = 132/176 (75.00%), Query Frame = 3
Query:   12 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 539
            DA+GLLKAAIRDP+PV+FLENE+LYG+SF V    LD  F LPIGKA+I R GKD T+ +F   +  ++KAA  L  +GI  E+I+LR+IRP+D  T+  SV+KT RLVTVEEG+PQ  VG EI   V++++F YLDAP+  IAG DVPMPYAANLE++A+P V ++V A K  CY
Sbjct:  287 DAKGLLKAAIRDPNPVIFLENEILYGQSFEVPK--LDD-FVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEIIDLRTIRPMDLPTVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLDAPILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAVCY 459          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.661e-50
Identity = 104/175 (59.43%), Postives = 125/175 (71.43%), Query Frame = 3
Query:    9 EDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 530
            EDARGLLKAA+RD +PV+ LENE+LYG  FPVS E     F LP G+AKI+R GKD+TI + S  V +SL AA+ LAK GI  EVINLR +RPLD  T+  SV KT  LVTVE G+P  GVGAEI A V E ++FGYLD P+ R+ G DVPMPYA  LE  A+PQ  D+V+  K+
Sbjct:  182 EDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIVSLSIGVDVSLHAADELAKSGIDCEVINLRCVRPLDFQTVKDSVIKTKHLVTVESGWPNCGVGAEISARVTESDAFGYLDGPILRVTGVDVPMPYAQPLETAALPQPADVVKMVKK 356          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.742e-50
Identity = 103/177 (58.19%), Postives = 131/177 (74.01%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 533
            +EDA+GLLKAAIRD +PVVFLENE+LYG+SFPV  EVL   F +PIGKAKIER G  VTI ++S+ V  SL+AA+ L   G+SAEVINLRS+RP D  +I  SV KT+ LV+VE G+P  G+G+EI A V+E + F  LDAP+ R+ G DVPMPY   LE  A+P  E +V+A K++
Sbjct:  172 AEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAALPTAEHVVKAVKKS 348          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 101/176 (57.39%), Postives = 125/176 (71.02%), Query Frame = 3
Query:   12 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 539
            DA+GLLKAAIR  DPVVFLE ELLYG++F V        F LPIGKA+I REGKDVTI ++S  V  +L AAE LAKEGI AEVI+LR++RPLD+ TI  S+ KTNR+VTVE+G+P   + +EI A  +EE F  LDAPV R+  AD P PYA NLE+  +   E I+ A ++ CY
Sbjct:  288 DAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKM---DDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGIDAEVIDLRTLRPLDKETILQSLAKTNRIVTVEDGWPVCSISSEIAAIAMEEGFDNLDAPVLRVTNADTPTPYAENLEKKGLVNPEAIIEAVRKVCY 460          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 96/181 (53.04%), Postives = 128/181 (70.72%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYGSV 548
            +ED +GL+  AIRD +PV+FLENE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA +L  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+P+A NLE++A+P   D++ A K+ CY SV
Sbjct:  150 AEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPETIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANVLQNDNIDCEVIDLRTIKPLDTDTIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPFAVNLEKLALPSESDVIEAVKKVCYYSV 326          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.044e-46
Identity = 95/178 (53.37%), Postives = 127/178 (71.35%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 539
            +ED +GL+  AIRD +PV+FLENE+LYG SF +S  V      +P GKAK+ +EG  VTI  FS  V L+L AA IL  + I+ EVI+LR+I+PLD  TI  SV+KT RLV +EEG+   G+GA I A V++E+F YLDAPVE ++G DVP+PYA NLE++A+P   D++ A K+ CY
Sbjct:  150 AEDHKGLMITAIRDDNPVIFLENEILYGHSFDISENVEP----IPFGKAKVLKEGDSVTIVTFSIQVKLALDAANILQSDNINCEVIDLRTIKPLDIDTIIESVKKTGRLVVIEEGWFFAGIGATIAAIVMKEAFDYLDAPVEIVSGKDVPLPYAVNLEKLALPSEYDVINAVKKVCY 323          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.858e-46
Identity = 95/181 (52.49%), Postives = 126/181 (69.61%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYGSV 548
            +ED +GL+  AIRD +PVVFLENE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA  +  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G D+P+PYA NLE +A+P   D++ A K+ CY S+
Sbjct:  150 AEDHKGLMLTAIRDDNPVVFLENEILYGHSFDVPKTIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANFVQNDNIDCEVIDLRTIKPLDTETIIESVKKTNRLVVVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDLPLPYAVNLETLALPSESDVIEAVKKVCYYSI 326          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.742e-45
Identity = 92/181 (50.83%), Postives = 129/181 (71.27%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYGSV 548
            +ED +GL+  AIRD +PV+FLENE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD  +I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY S+
Sbjct:  150 AEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTDSIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYSI 326          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.671e-44
Identity = 91/181 (50.28%), Postives = 129/181 (71.27%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYGSV 548
            +ED +GL+  AIRD +PV+FLENE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD + I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY ++
Sbjct:  150 AEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTNMIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYTI 326          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.673e-34
Identity = 83/173 (47.98%), Postives = 114/173 (65.90%), Query Frame = 3
Query:   12 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 530
            DA+GLL +AIRD DPV+FLE+  LY  SF    EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR+++PLD  TI  SV KT R + V+E   Q G+ A + A + E +   L+APV R+A  D   P+ A  E + +P  +D++  AK+
Sbjct:  153 DAKGLLISAIRDNDPVIFLEHLKLY-RSF--RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPF-AQAESVWLPNFKDVIETAKK 321          
The following BLAST results are available for this feature:
BLAST of CB611249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ODPB_RHIME1.843e-5158.52Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU2.661e-5059.43Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL7.742e-5058.19Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO1.614e-4757.39Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE1.367e-4653.04Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICBR3.044e-4653.37Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN8.858e-4652.49Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR5.742e-4550.83Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY1.671e-4450.28Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST2.673e-3447.98Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_C06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611249 ID=CB611249; Name=CB611249; organism=Citrus sinensis; type=EST; length=740bp
GGGGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCG
GATCCTGTTGTTTTTCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCC
GGTATCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATTGGGAAAG
CTAAAATTGAGAGAGAAGGAAAGGATGTAACTATTACAGCTTTCTCAAAA
ATTGTGGGCCTTTCACTCAAGGCGGCTGAGATACTTGCAAAGGAAGGAAT
AAGTGCTGAGGTTATCAATCTGCGGTCAATTAGGCCACTAGATAGATCCA
CAATCAATGCTTCTGTCAGGAAAACTAACAGACTGGTAACAGTCGAAGAA
GGGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTATTGA
GGAAAGCTTCGGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTG
ATGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCACAG
GTTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACGGATCTGTGCC
AATGGCTGCTGCACCATAAATGAACTGGATCTGCCCTGAAGCTTTGTCAG
ATCCTGGAACAATAGAGGGATTGTACATTTTCCCCGTTCTCAACACTTTT
TTGGGGGAATTGATCATGAAAGATCNGGAAATTNNTGATGACAGATCNNA
AATTTTGTGGCTTACTTTTCTCTTGTTAGATCGGAAAAAT
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