CB611250

Overview
NameCB611250
Unique NameCB611250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 54/132 (40.91%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  282 ITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            I++ E+I    T +ANG+R IGELIA+A EK     +  +A   T  + EL++  GM L RGY+SPYFIT+ KT++C L +P I+I EK+ S+    + L ++      +   +L++ ED+E+D LA L+LN
Sbjct:  168 ISTPEEITQVATISANGEREIGELIARAMEKVGKEGVITVADGNTLDN-ELEVVEGMKLARGYISPYFITDEKTQKCELENPIILIHEKKISD---INSLLKVLEAAVKSSRPLLIVAEDVESDALAMLILN 295          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 56/138 (40.58%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRR---YNGXDVLMIXEDIENDLLASLVLN 677
            ++P++ F ++A  G  +ANGD  +G  IA+A EK  G    +          EL +  GM  DRGYLSPYFITN +     L DPYI+I EK+ SN      L  I P+      +G  +L+I EDIE + LA+LV+N
Sbjct:  135 SKPVSDFNEVAQVGIISANGDEEVGRRIAEAMEKV-GKEGVITVEEAKGFDFELDVVEGMQFDRGYLSPYFITNPEKMVAELADPYILIYEKKLSN------LQSILPILESVVQSGRPLLIIAEDIEGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH602_RHISN (60 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR234) GN=groL2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRR---YNGXDVLMIXEDIENDLLASLVLN 677
            A+ +T  ++IA  GT +ANGD  IG  +A+A EK     +  +   KT  + EL++  GM  DRGYLSPYF+TN       L +PY++I EK+ SN      L  + PV      +G  +L+I ED+E + LA+LV+N
Sbjct:  135 ARKVTKNDEIAQVGTISANGDTEIGRFLAEAMEKVGNEGVITVEEAKTAVT-ELEVVEGMQFDRGYLSPYFVTNPDKMRVELEEPYVLIHEKKLSN------LQALLPVLESVVQSGKPLLIIAEDVEGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH601_RHILO (60 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 53/135 (39.26%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            A+ + S  +IA  GT AANGD  +G +IAKA +K   + +  +   KT  + EL +  GM  DRGYLSPYF+TN       L +PY++I EK+  N      +  I      +G  +L+I ED+E + LA+LV+N
Sbjct:  135 AKKVKSSAEIAQVGTIAANGDATVGAMIAKAMDKVGNDGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFVTNADKMRVELEEPYVLIHEKKLGN---LQAMLPILEAVVQSGRPLLIISEDVEGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_PROA2 (60 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 56/138 (40.58%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPV---RRYNGXDVLMIXEDIENDLLASLVLN 677
            ++ IT  ++IA  GT +AN D  IGELIA+A +K   + +  +   K   + EL +  GM  DRGYLSPYF+TN +  +  L DPYI+I +K+ SN      + E+ PV      +G  +++I EDIE + LA+LV+N
Sbjct:  135 SRDITGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDT-ELTVVEGMQFDRGYLSPYFVTNSEKMDADLEDPYILIYDKKISN------MKELLPVLEKTAQSGRPLMIIAEDIEGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_CAUSK (60 kDa chaperonin OS=Caulobacter sp. (strain K31) GN=groL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  270 TAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRR---YNGXDVLMIXEDIENDLLASLVLN 677
            +++ +T+  +IA  GT +ANGD+ +GE+IAKA +K     +  +   KT  + EL +  GM  DRGYLSPYFITN    E  L +P I++ EK+ S+      L  + PV      +G  +++I ED+E + LA+LV+N
Sbjct:  134 SSKKVTTNNEIAQVGTISANGDKDVGEMIAKAMDKVGNEGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLFEKKLSS------LQPLLPVLEAVVQSGRPLVIIAEDVEGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = 3
Query:  288 SFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            S + IA  GT +AN D+ IG +IA A +K   + +  +   KT  + EL    GM  DRGYLSPYF+++ +  E VL DPYI+I EK+ SN    DLL  +  + R +G  +L+I E++E + LA+LV+N
Sbjct:  138 SGDMIAQVGTISANSDKTIGNIIADAMKKVGKDGVITVEESKTMVT-ELDTVEGMQFDRGYLSPYFVSDAERMEAVLEDPYILIHEKKISN--MKDLLPLLEQIAR-SGKPLLIIAEEVEGEALATLVVN 263          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_RHIL3 (60 kDa chaperonin OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            A  + S  +IA  GT AANGD  IGE+IA+A +K  GN   +          EL +  GM  DRGYLSPYF+TN +     L +PYI++ EK+  +      L  I       G  +L+I ED+E + LA+LV+N
Sbjct:  135 AMKVKSSGEIAQVGTIAANGDATIGEMIARAMDKV-GNEGVITVEEARTAETELDVVEGMQFDRGYLSPYFVTNAEKMRVELEEPYILVHEKKLGS---LQALLPILEAVVQTGKPLLLISEDVEGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_DESPS (60 kDa chaperonin OS=Desulfotalea psychrophila GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  225 DKGLEWQLMHLWEIYTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            DKG+E  +  L  I T  P    ++IA  GT +AN D  IG +IA+A +K     +  +   K+  +  L +  GM  DRGYLSPYF+T+ +  E ++ DPYI+++EK+ SN    DLL  +  V +  G  + ++ ED++ + LA+LV+N
Sbjct:  121 DKGVEAVIAELRNIAT--PTKEQKEIAQVGTISANSDETIGNIIAEAMDKVGKEGVITVEEAKSMETT-LDVVEGMQFDRGYLSPYFVTDPERMEVIMDDPYILLVEKKVSN--MKDLLPVLEQVAKM-GKGLFILAEDVDGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_CHLCH (60 kDa chaperonin OS=Chlorobium chlorochromatii (strain CaD3) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 57/138 (41.30%), Postives = 84/138 (60.87%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPV---RRYNGXDVLMIXEDIENDLLASLVLN 677
            ++ I+S ++IA  GT +AN D  IGELIA+A EK   + +  +   K   + EL++  GM  DRGYLSPYF+TN  T E  L +P I+I +K+ SN      + E+ P+      +G  +L+I EDIE + LA+LV+N
Sbjct:  135 SRSISSKKEIAQVGTISANNDPEIGELIAEAMEKVGKDGVITVEEAKGMET-ELKVVEGMQFDRGYLSPYFVTNSDTMEAELDNPLILIYDKKISN------MKELLPILEKSAQSGRPLLIIAEDIEGEALATLVVN 265          
The following BLAST results are available for this feature:
BLAST of CB611250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60C_ARATH3.973e-1840.91Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
CH60_ZYMMO5.189e-1840.5860 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
CH602_RHISN5.189e-1839.8660 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR23... [more]
CH601_RHILO5.189e-1839.2660 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=... [more]
CH60_PROA26.777e-1840.5860 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH60_CAUSK6.777e-1838.8560 kDa chaperonin OS=Caulobacter sp. (strain K31) ... [more]
CH60_SOLUE8.851e-1842.3160 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH60_RHIL38.851e-1840.0060 kDa chaperonin OS=Rhizobium leguminosarum bv. v... [more]
CH60_DESPS8.851e-1837.0960 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]
CH60_CHLCH8.851e-1841.3060 kDa chaperonin OS=Chlorobium chlorochromatii (s... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_C07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611250 ID=CB611250; Name=CB611250; organism=Citrus sinensis; type=EST; length=685bp
GGGGTTCGGTTTTGGTCAATCGAATTCCTCTGTCCTTTCTGCGCAACAAA
ATCACAAACGATGTTGGGCCATGCCTCTGACCTCGCCTCCGAAGTCAGGT
TCATTTAACTCGGAGCAGACAGTATACCGCGGCGGAAGTCACTAAAAGAT
TTTTTGATTGCACCAATTCTAAAGTTAAAAGGGAGAATTTTATATGCGGG
AGGATGCGGAAGTGCCAGACCAAAGACAAGGGGCTAGAATGGCAATTGAT
GCACTTGTGGGAAATTTATACAGCACAACCCATCACATCATTCGAACAAA
TAGCCCTGTTTGGAACGGCTGCAGCAAATGGTGACAGAGTGATTGGCGAG
CTCATAGCCAAGGCTTTTGAGAAAGGTTGGGGAAACAATCTTCATGTTTT
AGCTGCTCGGAAAACACCACCCAGTATTGAACTTCAGTTGTATTGGGGAA
TGACCCTAGACAGGGGCTATTTGTCACCTTACTTCATCACCAATCATAAG
ACAAAAGAATGCGTTTTACGAGATCCTTATATCATGATCCTTGAGAAAAG
ATTTTCGAACTGCGTCTTCTTTGACTTATTGACAGAGATTGGACCAGTTA
GAAGATATAATGGCANAGATGTACTGATGATCNNTGAAGATATTGAAAAT
GATCTCCTAGCAAGTCTTGTCTTAAATGGAGTGGC
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