CB611250

Overview
NameCB611250
Unique NameCB611250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_PSEST (60 kDa chaperonin OS=Pseudomonas stutzeri GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 50/137 (36.50%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLNGV 683
            A+P T  + IA  GT +AN D  IG++IA+A E+  G    +     +    EL +  GM  DRGYLSPYFI    T    L  P +++++K+ SN    +LL  +  V +  G  +L++ ED+E + LA+LV+N +
Sbjct:  135 AKPCTDSKAIAQVGTISANSDSSIGDIIAEAMERV-GKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFINKPDTMVAELDSPLLLLVDKKISN--IRELLPVLEAVAK-AGRPLLIVAEDVEGEALATLVVNNM 267          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_PSEPW (60 kDa chaperonin OS=Pseudomonas putida (strain W619) GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLNGV 683
            ++P    + IA  GT +AN D  IGE+IA+A EK  G    +     +    EL +  GM  DRGYLSPYF+    T    L  P +++++K+ SN    +LL  +  V +  G  +L++ ED+E + LA+LV+N +
Sbjct:  135 SKPCADSKAIAQVGTISANSDNSIGEIIAEAMEKV-GKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMVAELESPLLLLVDKKISN--IRELLPVLEAVAK-AGRPLLIVAEDVEGEALATLVVNNM 267          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_PSEFS (60 kDa chaperonin OS=Pseudomonas fluorescens (strain SBW25) GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLNGV 683
            ++P    + IA  GT +AN D  IG++IA+A EK  G    +     T    EL +  GM  DRGYLSPYF+   +T    L  P I++++K+ SN    ++L  +  V +  G  +L++ ED+E + LA+LV+N +
Sbjct:  135 SKPCADTKAIAQVGTISANSDSSIGDIIAEAMEKV-GKEGVITVEEGTGLENELSVVEGMQFDRGYLSPYFVNKPETMVAELDSPLILLVDKKISN--IREMLPVLEAVAK-AGRPLLIVSEDVEGEALATLVVNNM 267          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_NEIMF (60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 48/137 (35.04%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLNGV 683
            A+P  + ++IA  G+ +AN D  +G +IA+A EK     +  +   K+  + EL +  GM  DRGYLSPYFI + + +   L +P++++ +K+ SN    DLL  +  V + +   +L+I ED+E + LA+LV+N +
Sbjct:  135 AKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLEN-ELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISN--IRDLLPVLEQVAKAS-RPLLIIAEDVEGEALATLVVNNI 267          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_NEIMA (60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 48/137 (35.04%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLNGV 683
            A+P  + ++IA  G+ +AN D  +G +IA+A EK     +  +   K+  + EL +  GM  DRGYLSPYFI + + +   L +P++++ +K+ SN    DLL  +  V + +   +L+I ED+E + LA+LV+N +
Sbjct:  135 AKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLEN-ELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISN--IRDLLPVLEQVAKAS-RPLLIIAEDVEGEALATLVVNNI 267          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_NEIGO (60 kDa chaperonin OS=Neisseria gonorrhoeae GN=groL PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 48/137 (35.04%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLNGV 683
            A+P  + ++IA  G+ +AN D  +G +IA+A EK     +  +   K+  + EL +  GM  DRGYLSPYFI + + +   L +P++++ +K+ SN    DLL  +  V + +   +L+I ED+E + LA+LV+N +
Sbjct:  135 AKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLEN-ELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISN--IRDLLPVLEQVAKAS-RPLLIIAEDVEGEALATLVVNNI 267          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_NEIG2 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain NCCP11945) GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 48/137 (35.04%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLNGV 683
            A+P  + ++IA  G+ +AN D  +G +IA+A EK     +  +   K+  + EL +  GM  DRGYLSPYFI + + +   L +P++++ +K+ SN    DLL  +  V + +   +L+I ED+E + LA+LV+N +
Sbjct:  135 AKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLEN-ELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISN--IRDLLPVLEQVAKAS-RPLLIIAEDVEGEALATLVVNNI 267          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_NEIG1 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 48/137 (35.04%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLNGV 683
            A+P  + ++IA  G+ +AN D  +G +IA+A EK     +  +   K+  + EL +  GM  DRGYLSPYFI + + +   L +P++++ +K+ SN    DLL  +  V + +   +L+I ED+E + LA+LV+N +
Sbjct:  135 AKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLEN-ELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISN--IRDLLPVLEQVAKAS-RPLLIIAEDVEGEALATLVVNNI 267          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_NEIFL (60 kDa chaperonin OS=Neisseria flavescens GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 48/137 (35.04%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLNGV 683
            A+P  + ++IA  G+ +AN D  +G +IA+A EK     +  +   K+  + EL +  GM  DRGYLSPYFI + + +   L +P++++ +K+ SN    DLL  +  V + +   +L+I ED+E + LA+LV+N +
Sbjct:  135 AKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLEN-ELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISN--IRDLLPVLEQVAKAS-RPLLIIAEDVEGEALATLVVNNI 267          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_LISW6 (60 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRR---YNGXDVLMIXEDIENDLLASLVLN 677
            ++PI S E IA    A ++GD  +G+LIA+A E+  GN+  +        + EL +  GM  DRGY SPY +T+    E VL  PYI+I +K+ +N      + EI PV       G  +L+I ED+E +  A+LVLN
Sbjct:  134 SKPIESKESIAQVA-AISSGDEEVGKLIAEAMERV-GNDGVITIEESKGFATELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYILITDKKINN------IQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLN 263          
The following BLAST results are available for this feature:
BLAST of CB611250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSEST2.041e-1436.5060 kDa chaperonin OS=Pseudomonas stutzeri GN=groL ... [more]
CH60_PSEPW2.041e-1435.7760 kDa chaperonin OS=Pseudomonas putida (strain W6... [more]
CH60_PSEFS2.041e-1435.7760 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH60_NEIMF2.041e-1435.0460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIMA2.041e-1435.0460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIGO2.041e-1435.0460 kDa chaperonin OS=Neisseria gonorrhoeae GN=groL... [more]
CH60_NEIG22.041e-1435.0460 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH60_NEIG12.041e-1435.0460 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH60_NEIFL2.041e-1435.0460 kDa chaperonin OS=Neisseria flavescens GN=groL ... [more]
CH60_LISW62.041e-1438.4160 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_C07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611250 ID=CB611250; Name=CB611250; organism=Citrus sinensis; type=EST; length=685bp
GGGGTTCGGTTTTGGTCAATCGAATTCCTCTGTCCTTTCTGCGCAACAAA
ATCACAAACGATGTTGGGCCATGCCTCTGACCTCGCCTCCGAAGTCAGGT
TCATTTAACTCGGAGCAGACAGTATACCGCGGCGGAAGTCACTAAAAGAT
TTTTTGATTGCACCAATTCTAAAGTTAAAAGGGAGAATTTTATATGCGGG
AGGATGCGGAAGTGCCAGACCAAAGACAAGGGGCTAGAATGGCAATTGAT
GCACTTGTGGGAAATTTATACAGCACAACCCATCACATCATTCGAACAAA
TAGCCCTGTTTGGAACGGCTGCAGCAAATGGTGACAGAGTGATTGGCGAG
CTCATAGCCAAGGCTTTTGAGAAAGGTTGGGGAAACAATCTTCATGTTTT
AGCTGCTCGGAAAACACCACCCAGTATTGAACTTCAGTTGTATTGGGGAA
TGACCCTAGACAGGGGCTATTTGTCACCTTACTTCATCACCAATCATAAG
ACAAAAGAATGCGTTTTACGAGATCCTTATATCATGATCCTTGAGAAAAG
ATTTTCGAACTGCGTCTTCTTTGACTTATTGACAGAGATTGGACCAGTTA
GAAGATATAATGGCANAGATGTACTGATGATCNNTGAAGATATTGAAAAT
GATCTCCTAGCAAGTCTTGTCTTAAATGGAGTGGC
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