CF417075 | Citrus Genome Database

Overview


Name	CF417075
Unique Name	CF417075
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	639

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13762	contig	Csv1_Contig13762:41..678.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.284e-36
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG + DT+LI G+ +DK++ HP MPKR+E AKIA++    E  + +T  ++ I + E+ Q   +QE+K   +MV K K+VGA +V  Q G DD A H L    + AVR V
Sbjct:  205 KEGGAVSDTKLIRGVVIDKEVVHPGMPKRVEKAKIALINDALEVKETETDAEIRITSPEQLQAFLEQEEKMLKEMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGILAVRRV 316

HSP 2 Score: 79.7221 bits (195), Expect = 1.284e-36
Identity = 37/95 (38.95%), Postives = 64/95 (67.37%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++LTPE LG+A LV E+      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  I+ G G
Sbjct:  320 DMEKLAKATGAKIVTNIRDLTPEDLGEAELVEERK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDILEDGKIIAGGG 412

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.672e-36
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            K GG + DT+L+YGI VDK++ HP MPKRIENAKIA+L    E  KP+   ++ I+   +     ++E+    + V K    GA +VICQ G D+ A H L  + + AVR
Sbjct:  211 KHGGSINDTQLVYGIVVDKEVVHPGMPKRIENAKIALLDASLEVEKPELDAEIRINDPTQMHKFLEEEENILKEKVDKIAATGANVVICQKGIDEVAQHYLAKKGILAVR 320

HSP 2 Score: 78.5666 bits (192), Expect = 1.672e-36
Identity = 39/95 (41.05%), Postives = 63/95 (66.32%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +LE +A ATGGR++    ELT + LG A LV E+  G  +D+M+++E   N ++V+I IRGG + +++ET+R++ DAL    ++IR+   V G G
Sbjct:  326 DLEKLARATGGRVISNIDELTSQDLGYAALVEERKVG--EDKMVFVEGAKNPKSVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGG 418

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.178e-36
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            K GG + DT+L+YGI VDK++ HP MPKRIENAKIA+L    E  KP+   ++ I+   +     ++E+    + V K    GA +VICQ G D+ A H L  + + AVR
Sbjct:  211 KHGGSVNDTQLVYGIVVDKEVVHPGMPKRIENAKIALLDASLEVEKPELDAEIRINDPTQMHKFLEEEENILKEKVDKIAATGANVVICQKGIDEVAQHYLAKKGILAVR 320

HSP 2 Score: 78.5666 bits (192), Expect = 2.178e-36
Identity = 39/95 (41.05%), Postives = 63/95 (66.32%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +LE +A ATGGR++    ELT + LG A LV E+  G  +D+M+++E   N ++V+I IRGG + +++ET+R++ DAL    ++IR+   V G G
Sbjct:  326 DLEKLARATGGRVISNIDELTSQDLGYAALVEERKVG--EDKMVFVEGAKNPKSVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGG 418

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.178e-36
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            K GG + DT+++YGI VDK++ HP MPKR+ENAKIA+L    E  KP+   ++ I+   + +    +E+    + V K    GA +VICQ G D+ A H L  + + AVR
Sbjct:  212 KHGGSINDTQIVYGIIVDKEVVHPGMPKRVENAKIALLDASLEVEKPELDAEIRINDPTQMKKFLDEEENILKEKVDKIAQTGANVVICQKGIDEVAQHYLAKKGILAVR 321

HSP 2 Score: 79.337 bits (194), Expect = 2.178e-36
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +LE +A ATGGR+V    ELT + LG A LV E+  G  +D+M++IE   N +AV+I IRGG + +++ET+R++ DAL    +++R+   + G G
Sbjct:  327 DLEKLARATGGRVVSNIDELTSQDLGYATLVEERKIG--EDKMVFIEGAKNPKAVSILIRGGLERVVDETERALRDALGTVADVVRDGRAIAGGG 419

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.837e-36
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG +ED+ L++G+ +DK++ H  MP+R+E AKIA+L    E  KP+   K+ I + E+ ++   +E +Y  +MV K   +GA +VICQ G DD A H L  + + AVR V
Sbjct:  211 KKGGSIEDSILVHGLVLDKEVVHAGMPRRVEKAKIAVLDAALEVEKPEISAKISITSPEQIKSFLDEEARYLKEMVDKLASIGANVVICQKGIDDVAQHFLAKKGILAVRRV 322

HSP 2 Score: 74.7146 bits (182), Expect = 2.837e-36
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +  A G RI+   ++ TPE LG A LV E+  G   D+M++IE   N RAV I +RG N M ++E +RS++DAL   RN++    IV G G
Sbjct:  326 DIEKLEKALGARIISSIKDATPEDLGYAELVEERRIGN--DKMVFIEGAKNPRAVNILLRGSNDMALDEAERSLNDALHSLRNVLMKPMIVAGGG 418

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.695e-36
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG +ED+ L+ G+ +DK++ HP MP+R+  AKIA+L    E  KP+   K+ I + E+ +    +E KY  DMV K   +GA +VICQ G DD A H L  + + AVR V
Sbjct:  210 KKGGSIEDSVLVKGLVLDKEVVHPGMPRRVTKAKIAVLDAALEVEKPEISAKISITSPEQIKAFLDEESKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKKGILAVRRV 321

HSP 2 Score: 72.4034 bits (176), Expect = 3.695e-36
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +  A G RI+   ++ TPE LG A LV E+  G   D+M++IE   N +AV I +RG N M ++E +RSI+DAL   RN++    I+ G G
Sbjct:  325 DIEKLEKALGARIISSIKDATPEDLGYAELVEERRVGN--DKMVFIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGG 417

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.167e-36
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG +ED+ L+ G+ +DK++ HP MP+R+  AKIA+L    E  KP+   K+ I + E+ +    +E KY  DMV K   +GA +VICQ G DD A H L  + + AVR V
Sbjct:  210 KKGGSIEDSVLVKGLVLDKEVVHPGMPRRVTKAKIAVLDAALEVEKPEISAKISITSPEQIKAFLDEESKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKKGILAVRRV 321

HSP 2 Score: 71.2478 bits (173), Expect = 8.167e-36
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +  A G RI+   ++ TP+ LG A LV E+  G   D+M++IE   N +AV I +RG N M ++E +RSI+DAL   RN++    I+ G G
Sbjct:  325 DIEKLEKALGARIISSIKDATPDDLGYAELVEERRVGN--DKMVFIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGG 417

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 8.169e-36
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG ++DT+LI G+ +DK++ HP MPKR+E AKIA++    E  + +T  ++ I + E+ Q   +QE+K   +MV K K+VGA +V  Q G DD A H L    + AVR V
Sbjct:  205 KEGGSVKDTQLIKGVVIDKEVVHPGMPKRVEGAKIALINEALEVKETETDAEIRITSPEQLQAFLEQEEKMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316

HSP 2 Score: 76.6406 bits (187), Expect = 8.169e-36
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++LTPE LG+A LV ++      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  IV   G
Sbjct:  320 DMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGG 412

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.169e-36
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG ++DT+LI G+ +DK++ HP MPKR+E AKIA++    E  + +T  ++ I + E+ Q   +QE+K   +MV K K+VGA +V  Q G DD A H L    + AVR V
Sbjct:  205 KEGGSVKDTQLIKGVVIDKEVVHPGMPKRVEGAKIALINEALEVKETETDAEIRITSPEQLQAFLEQEEKMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316

HSP 2 Score: 76.6406 bits (187), Expect = 8.169e-36
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++LTPE LG+A LV ++      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  IV   G
Sbjct:  320 DMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGG 412

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.817e-35
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG ++DT+LI G+ +DK++ HP M KR+E AKIA++    E  + +T  ++ I + E+ Q   +QE+K   +MV K K+VGA +V  Q G DD A H L    + AVR V
Sbjct:  205 KEGGSVKDTQLIKGVVIDKEVVHPGMRKRVEGAKIALINEALEVKETETDAEIRITSPEQLQAFLEQEEKMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316

HSP 2 Score: 76.6406 bits (187), Expect = 8.817e-35
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++LTPE LG+A LV ++      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  IV   G
Sbjct:  320 DMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGG 412

The following BLAST results are available for this feature:

BLAST of CF417075 vs. ExPASy Swiss-Prot

BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115


Match Name	E-value	Identity	Description
THS_PYRAB	1.284e-36	42.86	Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=...	[more]
THSB_SULSH	1.672e-36	42.73	Thermosome subunit beta OS=Sulfolobus shibatae GN=...	[more]
THSB_SULSO	2.178e-36	42.73	Thermosome subunit beta OS=Sulfolobus solfataricus...	[more]
THSB_SULAC	2.178e-36	40.91	Thermosome subunit beta OS=Sulfolobus acidocaldari...	[more]
THSA_SULAC	2.837e-36	41.07	Thermosome subunit alpha OS=Sulfolobus acidocaldar...	[more]
THSA_SULSO	3.695e-36	42.86	Thermosome subunit alpha OS=Sulfolobus solfataricu...	[more]
THSA_SULSH	8.167e-36	42.86	Thermosome subunit alpha OS=Sulfolobus shibatae GN...	[more]
THSB_THEK1	8.169e-36	42.86	Thermosome subunit beta OS=Thermococcus sp. (strai...	[more]
THSB_PYRKO	8.169e-36	42.86	Thermosome subunit beta OS=Pyrococcus kodakaraensi...	[more]
THSB_THEK8	8.817e-35	41.96	Thermosome subunit beta OS=Thermococcus sp. (strai...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG