CF417075 | Citrus Genome Database

Overview


Name	CF417075
Unique Name	CF417075
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	639

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13762	contig	Csv1_Contig13762:41..678.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.578e-23
Identity = 34/110 (30.91%), Postives = 63/110 (57.27%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L    E  K +++  ++I   E F  + Q E++Y   + +    +   +VI + G  D A H LM  N+ A+R V
Sbjct:  206 GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRV 315

HSP 2 Score: 58.151 bits (139), Expect = 5.578e-23
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1

Query:  361 IAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA A G RIV R +EL  + +G  AGL+  K  G   +   +I  C + +A TI +RG +K ++ E +R++ DA+ V RN++ +  +V G G
Sbjct:  323 IARACGARIVSRPEELREDDVGTGAGLLEIKKIG--DEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGG 412

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.258e-23
Identity = 34/110 (30.91%), Postives = 63/110 (57.27%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L    E  K +++  ++I   E F  + Q E++Y   + +    +   +VI + G  D A H LM  N+ A+R V
Sbjct:  206 GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRV 315

HSP 2 Score: 57.7658 bits (138), Expect = 7.258e-23
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1

Query:  361 IAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA A G RIV R +EL  + +G  AGL+  K  G   +   +I  C + +A TI +RG +K ++ E +R++ DA+ V RN++ +  +V G G
Sbjct:  323 IARACGARIVSRPEELREDDVGTGAGLLEIKKIG--DEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGG 412

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 7.258e-23
Identity = 34/110 (30.91%), Postives = 63/110 (57.27%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L    E  K +++  ++I   E F  + Q E++Y   + +    +   +VI + G  D A H LM  N+ A+R V
Sbjct:  206 GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRV 315

HSP 2 Score: 57.7658 bits (138), Expect = 7.258e-23
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1

Query:  361 IAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA A G RIV R +EL  + +G  AGL+  K  G   +   +I  C + +A TI +RG +K ++ E +R++ DA+ V RN++ +  +V G G
Sbjct:  323 IARACGARIVSRPEELREDDVGTGAGLLEIKKIG--DEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGG 412

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.443e-23
Identity = 34/110 (30.91%), Postives = 63/110 (57.27%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L    E  K +++  ++I   E F  + Q E++Y   + +    +   +VI + G  D A H LM  N+ A+R V
Sbjct:  206 GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRV 315

HSP 2 Score: 57.7658 bits (138), Expect = 9.443e-23
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1

Query:  361 IAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA A G RIV R +EL  + +G  AGL+  K  G   +   +I  C + +A TI +RG +K ++ E +R++ DA+ V RN++ +  +V G G
Sbjct:  323 IARACGARIVSRPEELREDDVGTGAGLLEIKKIG--DEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGG 412

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.229e-22
Identity = 36/110 (32.73%), Postives = 65/110 (59.09%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG +ED+ ++ G+ V+KD++HP+M + I+N +I +L C  E  K +++ +++I   E F  + Q E++Y   + +    +   +VI + G  D A H L+  N+ AVR V
Sbjct:  205 GGIIEDSCVLRGVMVNKDVTHPKMRRLIKNPRIILLDCSLEYKKGESQTEIEITREEDFARILQMEEEYIQQVCEDIIRLKPDVVITEKGISDLAQHYLVKANITAVRRV 314

HSP 2 Score: 55.0694 bits (131), Expect = 1.229e-22
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 1

Query:  361 IAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA A G RI  R  EL  E +G  AGL   K  G   +   +I  C + +A TI +RG +K ++ E +R++ DA+ V RN++ +  +V G G
Sbjct:  322 IARACGARIASRTDELREEDVGTGAGLFEIKKIG--DEYFTFITDCKDPKACTIVLRGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGG 411

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.229e-22
Identity = 34/110 (30.91%), Postives = 63/110 (57.27%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L    E  K +++  ++I   E F  + Q E++Y   + +    +   +VI + G  D A H LM  N+ A+R V
Sbjct:  206 GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRV 315

HSP 2 Score: 57.7658 bits (138), Expect = 1.229e-22
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1

Query:  361 IAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA A G RIV R +EL  + +G  AGL+  K  G   +   +I  C + +A TI +RG +K ++ E +R++ DA+ V RN++ +  +V G G
Sbjct:  323 IARACGARIVSRPEELREDDVGTGAGLLEIKKIG--DEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGG 412

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.599e-22
Identity = 35/108 (32.41%), Postives = 58/108 (53.70%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            GG  +D+ELI GI VDK+ ++  MPKR+EN K+ +   P +  K +   K+ I    + +    ++  Y   MV K K +G  L I Q   D+ A++L+    + A++
Sbjct:  201 GGEFDDSELINGIVVDKEPTNENMPKRVENVKVMLADFPLKLEKTEISMKLGISDPTQIKGYLDEQTAYVKQMVDKIKAMGVKLFITQKDIDEIASYLMGKNGIMALK 308

HSP 2 Score: 58.9214 bits (141), Expect = 1.599e-22
Identity = 33/95 (34.74%), Postives = 58/95 (61.05%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++EL++ ATG +I    ++     LG+A LV  ++ G  +++ L+I+    ++AVT+ I+G N M+ +E +RS++DA    RNL+    IV G G
Sbjct:  314 DIELLSRATGAKIASSMKDANESDLGEAKLVEVRNLG--KNKYLFIQS-DKAKAVTVIIKGSNNMITDEAERSLNDAFNSIRNLLLEPYIVAGGG 405

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 4.580e-22
Identity = 32/108 (29.63%), Postives = 60/108 (55.56%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            GG +E++ ++ G+ ++KD++HP+M + IEN +I +L C  E  K +++  V+I   + F  + Q E+++   +      V   LV  + G  D A H L+   + A+R
Sbjct:  208 GGAIEESCVLKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYKKGESQTNVEIIGEQDFTRMLQIEEEFVQRICADIIAVKPDLVFTEKGVSDLAQHYLLKAGITAIR 315

HSP 2 Score: 62.003 bits (149), Expect = 4.580e-22
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 1

Query:  361 IAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA A G  IV R +ELT + +G  AGL   K  G   +   ++  C   +A TI +RG +K ++ ET+R++ DAL VARNL+    +V G G
Sbjct:  325 IARACGATIVNRTEELTEKDVGTGAGLFEVKKIG--DEYFTFVTECKEPKACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGG 414

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 7.754e-22
Identity = 34/108 (31.48%), Postives = 57/108 (52.78%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            GG  +D+EL+ GI VDK+ ++  MPKR EN K+ +   P +  K +   K+ I    + +    ++  Y   MV K K +G  L I Q   D+ A++L+    + A++
Sbjct:  201 GGEFDDSELVNGIVVDKEPTNENMPKRAENVKVMLADFPLKLEKTEISMKLGISDPTQIKGYLDEQTAYVKQMVDKIKAMGVKLFITQKDIDEVASYLMGKSGIIALK 308

HSP 2 Score: 58.9214 bits (141), Expect = 7.754e-22
Identity = 33/95 (34.74%), Postives = 58/95 (61.05%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++EL++ ATG +I    ++     LG+A LV  ++ G  +++ L+I+    ++AVT+ I+G N M+ +E +RS++DA    RNL+    IV G G
Sbjct:  314 DIELLSRATGAKIASSMKDANESDLGEAKLVEVRNLG--KNKYLFIQS-DKAKAVTVIIKGSNNMVTDEAERSLNDAFNSIRNLLLEPYIVAGGG 405

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.312e-21
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E I    G + V      T +KLGKA LV E   GT+  +++ +    N  + VT+  RG NK++++E +RS+HDALCV R+L++   ++ G G
Sbjct:  327 DIEFICNTIGCQPVANIDSFTADKLGKADLVEE--VGTSDGKIVKVTGIPNPGKTVTVLCRGSNKLVLDEAERSLHDALCVIRSLVKKKFLIAGGG 420

HSP 2 Score: 55.4546 bits (132), Expect = 1.312e-21
Identity = 32/105 (30.48%), Postives = 53/105 (50.48%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQM-PKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            K+GG +EDTEL+ G+  D+  SH    P RI+NAKI ++      PK    + + +    K   + ++E K   +M +K +  G  +++ Q     D  N L +H
Sbjct:  206 KLGGTIEDTELVQGLVFDQTASHTAGGPTRIQNAKIGLIQFCLSAPKTYMDNNIVVSDYSKMDKVIKEEPKLILEMCRKIQKSGCNVLLVQKSILRDAVNDLSLH 310

The following BLAST results are available for this feature:

BLAST of CF417075 vs. ExPASy Swiss-Prot

BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115


Match Name	E-value	Identity	Description
TCPG_MACFA	5.578e-23	30.91	T-complex protein 1 subunit gamma OS=Macaca fascic...	[more]
TCPG_PONAB	7.258e-23	30.91	T-complex protein 1 subunit gamma OS=Pongo abelii ...	[more]
TCPG_HUMAN	7.258e-23	30.91	T-complex protein 1 subunit gamma OS=Homo sapiens ...	[more]
TCPG_RAT	9.443e-23	30.91	T-complex protein 1 subunit gamma OS=Rattus norveg...	[more]
TCPG_XENLA	1.229e-22	32.73	T-complex protein 1 subunit gamma OS=Xenopus laevi...	[more]
TCPG_MOUSE	1.229e-22	30.91	T-complex protein 1 subunit gamma OS=Mus musculus ...	[more]
THSG_SULSO	1.599e-22	32.41	Thermosome subunit gamma OS=Sulfolobus solfataricu...	[more]
TCPG_DROME	4.580e-22	29.63	T-complex protein 1 subunit gamma OS=Drosophila me...	[more]
THSG_SULSH	7.754e-22	31.48	Thermosome subunit gamma OS=Sulfolobus shibatae GN...	[more]
TCPD_DICDI	1.312e-21	36.46	T-complex protein 1 subunit delta OS=Dictyostelium...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG