CF417075

Overview
NameCF417075
Unique NameCF417075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:41..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.221e-21
Identity = 34/110 (30.91%), Postives = 62/110 (56.36%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG + D+ ++ G+ ++KD+ HP+M + IEN ++ +L CP E  K +++  ++I+  E +  + Q E++    M ++   V  TLVI + G  D A H L+      +R V
Sbjct:  211 GGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRV 320          

HSP 2 Score: 55.0694 bits (131), Expect = 2.221e-21
Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  361 IAIATGGRIVPRFQELTPEKLG-KAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA  TG  IV R ++L    +G   GL + +  G   +   ++++C   +A TI +RGG+K ++ E  R++ DA+ VARN++ + S+  G G
Sbjct:  328 IARVTGATIVNRVEDLKESDVGTNCGLFKVEMIG--DEYFSFLDNCKEPKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGG 417          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 4.890e-21
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS-RAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            E+E I  +TG + +   +    +KLG A LV E S  ++ ++++      N+ + V+I  RG N + +EE +RS+HDALCV R L++  +++ G G
Sbjct:  321 EVEFICKSTGCKPIADIESFAEDKLGHADLVEETS--SSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCVIRCLVKQRALIAGGG 414          

HSP 2 Score: 60.4622 bits (145), Expect = 4.890e-21
Identity = 33/105 (31.43%), Postives = 59/105 (56.19%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKD-MSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            K+GG ++DTELI G+ + +  +     P RIE A IA++     PPKP  +++V ++   +   + ++E++Y  +M +K K  GA +++ Q     D  N L +H
Sbjct:  200 KLGGIIDDTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKPDMENQVVVNDYRQMDKILKEERQYLLNMCKKIKKAGANVILIQKSILRDAVNDLALH 304          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.353e-21
Identity = 34/108 (31.48%), Postives = 59/108 (54.63%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            GG + D  ++ G+  +KD++H +M +RIEN +I +L  P E  K +++  V+I   E + TL + E++Y ++M  +       +VI + G  D A H     N+ A R
Sbjct:  221 GGEISDCAVLSGVMFNKDVTHSKMRRRIENPRILLLDTPLEYKKGESQTNVEITDEEDWNTLLKMEEEYVENMCMEIIAFKPDIVITEKGVSDLAQHYFAKANITAFR 328          

HSP 2 Score: 54.299 bits (129), Expect = 6.353e-21
Identity = 30/92 (32.61%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  361 IAIATGGRIVPRFQELTPEKLGKA-GLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +A ATG  IV R  E+    +G   GL   +  G  ++   + E C + +A TI +RGG+K ++ E +R++ DA+ V RN++ +  ++ G G
Sbjct:  338 VARATGATIVSRTDEIRESDIGTGCGLFEMRKIG--EEYFAFFEECKDPKACTIILRGGSKDVLNEIERNLTDAMQVVRNVVFDPRLLPGGG 427          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.145e-19
Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+   +A GG I      L+ + LG+  L  E   G   DR  +   C  ++  TI +RGG +  +EET+RS+HDA+ + R  I+N+S+V G G
Sbjct:  318 DLKRTMMACGGSIQTSVNALSDDVLGRCELFEEIQIGG--DRYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGG 410          

HSP 2 Score: 52.373 bits (124), Expect = 1.145e-19
Identity = 31/107 (28.97%), Postives = 51/107 (47.66%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL 320
            GG LED++L+ G+   K  S+      PK+ ++ KIA+L    E    K   +V ++TVE +Q +   E     D + K    GA +V+ +    D A      R++
Sbjct:  202 GGALEDSQLVAGVAFKKTFSYAGFEMQPKKYQSPKIALLNVELELKAEKDNAEVRVNTVEDYQAIVDAEWNILYDKLDKIHKSGAKVVLSKLPIGDVATQYFADRDM 308          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.146e-19
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E I    G + +      TPE LG A L  E S   +  +++ I  CA+  + V+I +RG NK++IEE +RSIHDALCV R L++  +++ G G
Sbjct:  329 DIEFICKTIGTKPIAHIDHFTPEMLGTAELAEEVSLDGS-GKLVKITGCASPGKTVSIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGG 423          

HSP 2 Score: 47.7506 bits (112), Expect = 1.146e-19
Identity = 22/90 (24.44%), Postives = 50/90 (55.56%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQ 272
            K+GG ++D EL+ G+ + + +++  +  R+E AKI ++     PPK    +++ +    +   + ++E+ Y  +MV++ K  G  ++  Q
Sbjct:  210 KLGGTIDDCELVEGLVLTQRVANSSV-SRVEKAKIGLIQFCLSPPKTDMDNQIVVSDYTQMDRVLREERAYILNMVKQIKKAGCNVLFIQ 298          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.491e-19
Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            GG + D  +I G+ ++KD++HP+M + I+N +I +L C  E  K ++   VDI   + F  L + E++Y   + +    +   LV  + G  D A H  + + +  +R
Sbjct:  205 GGDISDCRVIRGVMLNKDVTHPKMKRMIKNPRIVLLDCSLEYKKGESDTMVDITNEDDFSALLKIEEEYVQRICEDIIKLKPDLVFTEKGVSDLAQHFFVKKGITCLR 312          

HSP 2 Score: 53.1434 bits (126), Expect = 1.491e-19
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1
Query:  361 IAIATGGRIVPRFQELTPEKLGKA-GLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA  +G  IV R  EL    +G   GL   +  G   +   ++E C   +A TI +RG +K ++ E +R++ DAL VARN++ +  +V G G
Sbjct:  322 IARISGATIVSRTDELQESDIGTGCGLFEIRKIG--DEYFTFLEDCKEPKACTILLRGASKDILNEVERNLTDALNVARNIVLDPRLVPGGG 411          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.937e-19
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+   +A GG I      L P+ LG   +  E   G   +R  +   C  ++  TI +RGG +  +EET+RS+HDA+ + R  I+N+S+V G G
Sbjct:  318 DLKRTMMACGGSIQTSVNALVPDVLGHCQVFEETQIGG--ERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGG 410          

HSP 2 Score: 51.9878 bits (123), Expect = 1.937e-19
Identity = 29/107 (27.10%), Postives = 51/107 (47.66%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL 320
            GG LE+++L+ G+   K  S+      PK+ +N KIA+L    E    K   ++ + TVE +Q +   E     D ++K    GA +++ +    D A      R++
Sbjct:  202 GGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQYFADRDM 308          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 1.939e-19
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            E+E ++   G + +   +  T ++LG A LV E  S G+   R+  I +      V++ IRG N M+I+ET+RS+HDALCV R L++   ++ G G
Sbjct:  320 EIEFLSKGLGCKPIADIELFTEDRLGSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGG 415          

HSP 2 Score: 53.5286 bits (127), Expect = 1.939e-19
Identity = 29/105 (27.62%), Postives = 55/105 (52.38%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKD-MSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            KVGG ++DTE+I G+ + +  +     P R E AKI ++     PPKP T++ + ++   +   + ++E+ Y  ++ +K K     +++ Q     D  N L +H
Sbjct:  199 KVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALH 303          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.939e-19
Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            E+E ++ + G + +   +  T ++LG A +V E +S G+    +  ++    +  V++ IRG N M+++ET+RS+HDALCV R L++  +++ G G
Sbjct:  322 EVEFLSKSLGCKPISDVELFTEDRLGSADVVEEVESDGSNIVTITGVKTTNKNPTVSVVIRGANNMVLDETERSLHDALCVIRCLVKERALIAGGG 417          

HSP 2 Score: 55.4546 bits (132), Expect = 1.939e-19
Identity = 28/105 (26.67%), Postives = 57/105 (54.29%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKD-MSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            KVGG ++DTE++ G+ + ++ +     P RIE A+I ++     PPKP T++ + ++   +   + ++E+ Y  ++ +K K     +++ Q     D  N L +H
Sbjct:  201 KVGGTIDDTEMVNGVVLTQNAVKTAGGPTRIEKARIGLIQFQISPPKPDTENNIVVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALH 305          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.521e-19
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            GG +E + ++ G+ ++KD++HP+M +RIEN +I +L CP E  K +++  ++I     +  + + E++    M      V   LVI + G  D A H L+  N+ A+R
Sbjct:  204 GGEIESSCVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYRKGESQTNIEISKDTDWNRILEIEEEQVKRMCDYIIAVKPDLVITEKGVSDLAQHYLLKANITALR 311          

HSP 2 Score: 49.2914 bits (116), Expect = 2.521e-19
Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 1
Query:  361 IAIATGGRIVPRFQELTPEKLGKA-GLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA A G  IV R ++L  + +G   GL      G   +   ++  C N +A TI +RG +K +I E +R++ DA+ VARN+  +  +  G G
Sbjct:  321 IARACGANIVNRLEDLREKDVGTGCGLFYIDKLG--DEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGG 410          
The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
TCPG_YEAST2.221e-2130.91T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPD_SCHPO4.890e-2134.38T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPG_THAWE6.353e-2131.48T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPH_CHICK1.145e-1935.79T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPD_TAKRU1.146e-1938.54T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPG_DICDI1.491e-1928.70T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
TCPH_MOUSE1.937e-1934.74T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPD_YEAST1.939e-1936.46T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPD_KLULA1.939e-1932.29T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
TCPG_SCHPO2.521e-1931.48T-complex protein 1 subunit gamma OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG
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