CF417075

Overview
NameCF417075
Unique NameCF417075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:41..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV-----------GGCRIGADCHSHRWKNCSKVSGVDTRK 419
            K GG L DT L+ GI +DK++ HP MP+R+ENA+IA+L  P E  KP+   ++ I + E+ + L +++++   + ++K    GA +VI Q G DD A H L  + + AVR V            G RI  D    R ++      V+ RK
Sbjct:  212 KHGGSLRDTRLVRGIVLDKEVVHPDMPRRVENARIALLDTPLEIEKPEIDLEISITSPEQIKALYEKQERILQEKIEKIAATGANVVITQKGIDDVAQHFLAKKGILAVRRVKRSDIEKIARATGARIVTDIEDLRPEDLGYAELVEERK 361          

HSP 2 Score: 82.4185 bits (202), Expect = 2.144e-15
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E IA ATG RIV   ++L PE LG A LV E+  G  +D+M++IE   N ++VTI +RGG + +++E +RS+HDAL V  + I +  IV G G
Sbjct:  327 DIEKIARATGARIVTDIEDLRPEDLGYAELVEERKVG--EDKMVFIEGAKNPKSVTILLRGGFERLVDEAERSLHDALSVVADAIMDGKIVAGGG 419          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 7.201e-19
Identity = 33/113 (29.20%), Postives = 61/113 (53.98%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV---GATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG LED+ ++ G+  +KD++HP+M + I+N ++ +L CP E  K ++   +++          QQE    +++   C D+      +VI + G  D A H L+ +N+  +R V
Sbjct:  209 GGTLEDSVVLDGVMFNKDITHPKMRRFIKNPRVILLDCPLEYKKGESMTNLEMMKETDMTDALQQE---MEELALMCNDILKHKPDVVITEKGVSDLAQHYLLKQNVSVIRRV 318          

HSP 2 Score: 54.299 bits (129), Expect = 7.201e-19
Identity = 31/92 (33.70%), Postives = 50/92 (54.35%), Query Frame = 1
Query:  361 IAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            I+  +G  IV R +E+    +GK  GL   K  G   +   ++  C N  A +I +RG +K ++ E +R++HD L VA+N+  N  +V G G
Sbjct:  326 ISRVSGATIVNRPEEIQESDVGKKCGLFEVKLIG--DEYFTFMTECENPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGG 415          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 7.205e-19
Identity = 31/95 (32.63%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+   +A GG I      L+ + LG+  +  E   G   +R  +   C  ++  T  +RGG +  +EET+RS+HDA+ + R  I+N+S+V G G
Sbjct:  318 DLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGG--ERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGG 410          

HSP 2 Score: 53.1434 bits (126), Expect = 7.205e-19
Identity = 31/107 (28.97%), Postives = 50/107 (46.73%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL 320
            GG LED++L+ G+   K  S+      PK+  N KIA+L    E    K   ++ + TVE +Q +   E     D ++K    GA +V+ +    D A      R++
Sbjct:  202 GGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDM 308          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 63.5438 bits (153), Expect = 7.209e-19
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            LE + +A GG  V  F+ L+ E LG AGLV E + G  +++  +IE C N  +VT+ ++G NK  + + K ++ D L   +N I +  +V G G
Sbjct:  321 LERLTLACGGLAVNSFEGLSEECLGHAGLVFEYALG--EEKFTFIEDCVNPLSVTLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAG 412          

HSP 2 Score: 50.8322 bits (120), Expect = 7.209e-19
Identity = 34/112 (30.36%), Postives = 54/112 (48.21%), Query Frame = 3
Query:   24 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV---------GATLVICQWGFDDEANHLLMHRNLPAVR 332
            DT+LI G+ +D    HP+M K++ +A I       E  K +        TVE+ + L + E+K+ +D VQK  D+            +VI Q G D  +  +L   N+ A+R
Sbjct:  203 DTQLIRGLVLDHGARHPRMRKQVRDAYILTCNVSLEYEKTEVSSGFFYKTVEEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPVSLEMLAKHNIVALR 314          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 7.209e-19
Identity = 33/98 (33.67%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA---VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            E+E ++ ATG + +      T ++LG A +V E    ++  R++ I+  +       V+I  RG N+++++ET+RSIHDALCV R L++  +++ G G
Sbjct:  325 EIEFLSKATGCKPIADIDNFTEDRLGSADVVEE--IESSGSRIVKIDGVSAKNVKPTVSIVCRGANQLVLDETERSIHDALCVVRCLVKEKALIAGGG 420          

HSP 2 Score: 52.7582 bits (125), Expect = 7.209e-19
Identity = 28/105 (26.67%), Postives = 57/105 (54.29%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQM-PKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            KVGG +++TEL+ G+ + +++      P R++ AKIA++     PPKP  ++ V ++   +   + ++E+ Y  ++ +K K     +++ Q     D  N L +H
Sbjct:  204 KVGGTIDETELVNGVVLTQNVVKTAGGPVRVDKAKIALIQFQLSPPKPDMENNVVVNDYRQMDKILKEERAYLLNICKKIKKSKCNVLLIQKSILRDAVNDLALH 308          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 9.369e-19
Identity = 31/95 (32.63%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+   +A GG I      L+ + LG+  +  E   G   +R  +   C  ++  T  +RGG +  +EET+RS+HDA+ + R  I+N+S+V G G
Sbjct:  318 DLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGG--ERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGG 410          

HSP 2 Score: 52.7582 bits (125), Expect = 9.369e-19
Identity = 30/107 (28.04%), Postives = 50/107 (46.73%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL 320
            GG LED++L+ G+   K  S+      PK+  N K+A+L    E    K   ++ + TVE +Q +   E     D ++K    GA +V+ +    D A      R++
Sbjct:  202 GGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKVALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDM 308          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 9.375e-19
Identity = 32/96 (33.33%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            E+E ++ + G + +   +  T ++LG A LV E  S GT   ++  I+       V+  +RG N ++++ET+RS+HDALCV R L++  +++ G G
Sbjct:  321 EIEFLSKSLGCKPISDVELFTEDRLGSADLVEEIDSDGTKIVKITGIKTGNAKPTVSCIVRGANNVVLDETERSLHDALCVIRCLVKERALIAGGG 416          

HSP 2 Score: 54.6842 bits (130), Expect = 9.375e-19
Identity = 28/105 (26.67%), Postives = 56/105 (53.33%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDM-SHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            KVGG ++DTE++ G+ + +++      P R+E AKI ++     PPKP T++ + ++   +   + ++E+ Y   + +K K     +++ Q     D  N L +H
Sbjct:  200 KVGGTIDDTEMVDGVVLTQNIVKSAGGPVRMEKAKIGLIQFQISPPKPDTENNIVVNDYRQMDKILKEERAYLLKICKKIKKAKCNVLLIQKSILRDAVNELALH 304          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.219e-18
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +E + +A GG  +  F +L+P++LG AGLV E + G  +++  +IE C N R+VT+ I+G NK  + + K ++ D L   RN I +  +V G G
Sbjct:  321 MERLTLACGGVALNSFDDLSPDQLGHAGLVYEYTLG--EEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVRNAIDDGCVVPGAG 412          

HSP 2 Score: 43.8986 bits (102), Expect = 1.219e-18
Identity = 33/112 (29.46%), Postives = 50/112 (44.64%), Query Frame = 3
Query:   24 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQK--------CKDVG-ATLVICQWGFDDEANHLLMHRNLPAVR 332
            DT LI G+ +D    HP M KR+E+A I       E  K +        + E+ + L + E+K+ +D V+K        C D     +VI Q G D  +   L    + A+R
Sbjct:  203 DTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKRKVCGDSDKGFVVINQKGIDPFSLDALSKEGIVALR 314          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.585e-18
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E I    G + V    + TP+ LG A L  E S   +  ++  I  C +  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ G G
Sbjct:  332 DIEFICKTIGTKPVAHIDQFTPDMLGSAELAEEVSLNGS-GKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGG 426          

HSP 2 Score: 43.5134 bits (101), Expect = 1.585e-18
Identity = 20/90 (22.22%), Postives = 50/90 (55.56%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQ 272
            K+GG ++D EL+ G+ + + +++  +  R+E AKI ++      PK    +++ +    +   + ++E+ Y  ++V++ K  G  +++ Q
Sbjct:  213 KLGGTIDDCELVEGLVLTQKVANSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQ 301          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.585e-18
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E I    G + V    + T + LG A L  E +   +  ++L I  CA+  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ G G
Sbjct:  332 DIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGS-GKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGG 426          

HSP 2 Score: 44.669 bits (104), Expect = 1.585e-18
Identity = 21/90 (23.33%), Postives = 50/90 (55.56%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQ 272
            K+GG ++D EL+ G+ + + +S+  +  R+E AKI ++      PK    +++ +    +   + ++E+ Y  ++V++ K  G  +++ Q
Sbjct:  213 KLGGTIDDCELVEGLVLTQKVSNSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQ 301          
The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
THSB_AERPE4.134e-1935.33Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
TCPG_TETPY7.201e-1929.20T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPH_HUMAN7.205e-1932.63T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPW_MOUSE7.209e-1936.17T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPD_DEBHA7.209e-1933.67T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
TCPH_PONAB9.369e-1932.63T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPD_ASHGO9.375e-1933.33T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
TCPZ_PONAB1.219e-1837.23T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPD_RAT1.585e-1838.54T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_PONAB1.585e-1838.54T-complex protein 1 subunit delta OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG
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