CF417075

Overview
NameCF417075
Unique NameCF417075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:41..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 1.585e-18
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E I    G + V    + T + LG A L  E +   +  ++L I  CA+  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ G G
Sbjct:  332 DIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGS-GKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGG 426          

HSP 2 Score: 44.669 bits (104), Expect = 1.585e-18
Identity = 21/90 (23.33%), Postives = 50/90 (55.56%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQ 272
            K+GG ++D EL+ G+ + + +S+  +  R+E AKI ++      PK    +++ +    +   + ++E+ Y  ++V++ K  G  +++ Q
Sbjct:  213 KLGGTIDDCELVEGLVLTQKVSNSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQ 301          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 2.680e-18
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +E + +A GG  +  F +L P+ LG AGLV E + G  +++  +IE C N R+VT+ ++G NK  + + K +I D L   +N I +  +V G G
Sbjct:  321 MERLTLACGGIALNSFDDLNPDCLGHAGLVYEYTLG--EEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAG 412          

HSP 2 Score: 45.8246 bits (107), Expect = 2.680e-18
Identity = 34/112 (30.36%), Postives = 50/112 (44.64%), Query Frame = 3
Query:   24 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQK--------CKDVG-ATLVICQWGFDDEANHLLMHRNLPAVR 332
            DT LI G+ +D    HP M KR+ENA I       E  K +        + E+ + L + E+K+ +D V+K        C D     +VI Q G D  +   L    + A+R
Sbjct:  203 DTSLIRGLVLDHGARHPDMKKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALR 314          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.680e-18
Identity = 34/94 (36.17%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +E + +A GG  +   ++LTP+ LG AGLV E + G  +++  +IE C N R+VT+ IRG NK  + + K ++ D L   +N I +  ++ G G
Sbjct:  320 MERLTLACGGTAMNSVEDLTPDCLGHAGLVYEYTLG--EEKYTFIEKCDNPRSVTLLIRGPNKHTLTQIKDAVRDGLRAVKNAIEDGCVIPGAG 411          

HSP 2 Score: 43.8986 bits (102), Expect = 2.680e-18
Identity = 32/112 (28.57%), Postives = 49/112 (43.75%), Query Frame = 3
Query:   24 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV---------GATLVICQWGFDDEANHLLMHRNLPAVR 332
            DT LI G+ +D    HP M KR+E+A I       E  K +        + E+ + L + E+K+ +D V K  D+            +VI Q G D  +   L    + A+R
Sbjct:  202 DTTLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVSAGFFYKSAEEREKLVKAERKFIEDRVSKIIDLKRRVCGDSDKGFIVINQKGIDPFSLDALAKEGIVALR 313          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.680e-18
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            E+E ++ + G + +   +  T ++LG A LV E  S GT   +   ++       V++ IRG N M+++ET+RS+HDALCV R L++   ++ G G
Sbjct:  321 EIEFLSKSLGCKPISDVELFTEDRLGSADLVEEIDSDGTKIVKFSGVKGVNAKPTVSVIIRGANSMILDETERSLHDALCVIRCLVKERGLIAGGG 416          

HSP 2 Score: 50.447 bits (119), Expect = 2.680e-18
Identity = 31/108 (28.70%), Postives = 53/108 (49.07%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGI----TVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            KVGG + DTE++ G+    TV K    P M    E AKI ++     PPKP T++ + +    +   + ++E+ Y  ++ +K K     +++ Q     D  N L +H
Sbjct:  200 KVGGTIGDTEMVDGVVLTQTVVKTAGGPTMK---EKAKIGLIQFQISPPKPDTENNIVVSDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALH 304          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.482e-18
Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+   +A GG I      L+ + LG+  +  E   G   +R  +   C  ++  TI +RGG +  +EET+RS+HDA+ + R  I+N+S+V G G
Sbjct:  318 DLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGG--ERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGG 410          

HSP 2 Score: 49.2914 bits (116), Expect = 3.482e-18
Identity = 29/107 (27.10%), Postives = 49/107 (45.79%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL 320
            GG LE+++L+ G+   K  S+      PK+  N  IA+L    E    K   ++ + TVE +Q +   E     D ++K    GA +V+ +    D A      R++
Sbjct:  202 GGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDM 308          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.500e-18
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K G  ++D+ L+ G+ +DK+  HP MPK++ENAKIA+L CP E  + +   ++ I    + Q   +QE++   DMV    D GA ++ CQ G DD A H L    + AVR V
Sbjct:  198 KEGAAVDDSTLVQGVIIDKERVHPGMPKKVENAKIALLNCPIEVKETEVDAEIRITDPSQMQAFIEQEEQMIRDMVNSIVDTGANVLFCQKGIDDLAQHYLAKAGVLAVRRV 309          

HSP 2 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 38/110 (34.55%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  322 LLSAGLVGV------ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            L  AG++ V      ++E ++ ATG  IV   ++L+PE LG+AG+V EK    + + M+++E C   +AVTI +RG  + ++ E +R+I DA+ V    + +  +V G G
Sbjct:  298 LAKAGVLAVRRVKKSDMEKLSKATGANIVTNIEDLSPEDLGEAGVVSEKKI--SGEEMIFVEECKEPKAVTILVRGSTEHVVSEVERAIEDAIGVVAATVEDGKVVAGGG 405          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.528e-18
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E I    G + V    + T + LG A L  E S   +  +++ I  CA+  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ G G
Sbjct:  335 DIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGS-GKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGG 429          

HSP 2 Score: 43.1282 bits (100), Expect = 4.528e-18
Identity = 20/90 (22.22%), Postives = 50/90 (55.56%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQ 272
            K+GG ++D EL+ G+ + + +++  +  R+E AKI ++      PK    +++ +    +   + ++E+ Y  ++V++ K  G  +++ Q
Sbjct:  216 KLGGTIDDCELVEGLVLTQKVANSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQ 304          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.657e-18
Identity = 34/94 (36.17%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +E + +A GG  +  F +L+P+ LG AGLV E + G  +++  +IE C N R+VT+ I+G NK  + + K ++ D L   +N I +  +V G G
Sbjct:  321 MERLTLACGGVALNSFDDLSPDCLGHAGLVYEYTLG--EEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAIDDGCVVPGAG 412          

HSP 2 Score: 43.8986 bits (102), Expect = 7.657e-18
Identity = 33/112 (29.46%), Postives = 50/112 (44.64%), Query Frame = 3
Query:   24 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQK--------CKDVG-ATLVICQWGFDDEANHLLMHRNLPAVR 332
            DT LI G+ +D    HP M KR+E+A I       E  K +        + E+ + L + E+K+ +D V+K        C D     +VI Q G D  +   L    + A+R
Sbjct:  203 DTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKRKVCGDSDKGFVVINQKGIDPFSLDALSKEGIVALR 314          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 1.294e-17
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E I    G + V    + T + LG A L  E S   +  ++  I  C +  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ G G
Sbjct:  332 DIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGS-GKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGG 426          

HSP 2 Score: 43.5134 bits (101), Expect = 1.294e-17
Identity = 20/90 (22.22%), Postives = 50/90 (55.56%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQ 272
            K+GG ++D EL+ G+ + + +++  +  R+E AKI ++      PK    +++ +    +   + ++E+ Y  ++V++ K  G  +++ Q
Sbjct:  213 KLGGTIDDCELVEGLVLTQKVANSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQ 301          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG +E+TEL+ GI +DK++ HP MPKR+ENAKI +L    E  + +   K+ I   EK Q   +QE+    +MV K  + GA +V CQ G DD A + L    + AVR V
Sbjct:  207 GGSIEETELVDGIVLDKEVVHPGMPKRVENAKILLLDSALEVKETEIDAKIRITDPEKLQKFIEQEEAMLKEMVDKIVNAGANVVFCQKGIDDLAQYYLAKAGVLAVRRV 316          

HSP 2 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 36/110 (32.73%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  322 LLSAGLVGV------ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            L  AG++ V      ++E +A ATG +++   ++++ E LG+A LV E+  G   ++M+++  C N +AVTI +RGG + ++EE  R I DA+      + +  +V G G
Sbjct:  305 LAKAGVLAVRRVKKSDMEKLAKATGAKVLTDLRDISSEDLGEAALVEERKVG--DEKMVFVTGCKNPKAVTILVRGGTEHVVEEIARGIEDAVRAVACAVEDGKVVVGAG 412          
The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
TCPD_HUMAN1.585e-1838.54T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPZ_MOUSE2.680e-1836.17T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPZ_CHICK2.680e-1836.17T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPD_CANGA2.680e-1834.38T-complex protein 1 subunit delta OS=Candida glabr... [more]
TCPH_BOVIN3.482e-1833.68T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
THSB_METTH3.500e-1839.29Thermosome subunit beta OS=Methanobacterium thermo... [more]
TCPD_BOVIN4.528e-1838.54T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPZ_HUMAN7.657e-1836.17T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
TCPD_MOUSE1.294e-1737.50T-complex protein 1 subunit delta OS=Mus musculus ... [more]
THSB_ARCFU1.330e-1742.73Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG
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