CF417075 | Citrus Genome Database

Overview


Name	CF417075
Unique Name	CF417075
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	639

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13762	contig	Csv1_Contig13762:41..678.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.188e-17
Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +      R +       PE L  A LV E S G++  + + +    N  + V+I +RG NK+++EE +RS+HDALCV R L++  + + G G
Sbjct:  326 DIEFVCKTLNCRPIASLDHFLPEHLVNADLVEEVSSGSS--KFVKVTGIQNMGQTVSIVVRGSNKLVLEEAERSLHDALCVVRCLVKKRAQIAGGG 419

HSP 2 Score: 51.2174 bits (121), Expect = 2.188e-17
Identity = 28/103 (27.18%), Postives = 50/103 (48.54%), Query Frame = 3

Query:    6 VGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            +GG ++DTEL+ G+   +       PKR+E AKI ++      PK    H V +        + ++E+ Y  ++V++ K  G  +++ Q     D  + L MH
Sbjct:  207 LGGTIDDTELVDGLVFTQRSCGVNGPKRVEKAKIGLIQFCISAPKTDMDHSVIVSDYAAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAVSDLAMH 309

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.844e-17
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 1

Query:  328 SAGLVGVE------LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +AG++ +E      +E +A+ TGG I   F      KLG   L+ E   G  +D++++    A   A TI +RG  + +++E +RS+HDALCV    ++++  VYG G
Sbjct:  306 AAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGG 411

HSP 2 Score: 40.4318 bits (93), Expect = 2.844e-17
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQK 236
            K+GG L D+ L  G  +DK +   Q PKRIENAKI I     +  K K    +V +D+  K   +   E++   + V++
Sbjct:  204 KLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVER 281

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 2.844e-17
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 1

Query:  328 SAGLVGVE------LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +AG++ +E      +E +A+ TGG I   F      KLG   L+ E   G  +D++++    A   A TI +RG  + +++E +RS+HDALCV    ++++  VYG G
Sbjct:  306 AAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGG 411

HSP 2 Score: 40.4318 bits (93), Expect = 2.844e-17
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQK 236
            K+GG L D+ L  G  +DK +   Q PKRIENAKI I     +  K K    +V +D+  K   +   E++   + V++
Sbjct:  204 KLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVER 281

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.844e-17
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 1

Query:  328 SAGLVGVE------LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +AG++ +E      +E +A+ TGG I   F      KLG   L+ E   G  +D++++    A   A TI +RG  + +++E +RS+HDALCV    ++++  VYG G
Sbjct:  306 AAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGG 411

HSP 2 Score: 40.4318 bits (93), Expect = 2.844e-17
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQK 236
            K+GG L D+ L  G  +DK +   Q PKRIENAKI I     +  K K    +V +D+  K   +   E++   + V++
Sbjct:  204 KLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVER 281

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 3.696e-17
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E  +   G R V        + LG A LV E   G    +++ +    N   AV+I +RG NK+++EE  RSIHDALCV R L++  +++ G G
Sbjct:  332 DIEFYSRILGCRPVASVDHFNADALGYADLVEEIPTGG-DGKVIKVTGVQNPGHAVSILLRGSNKLVLEEADRSIHDALCVIRCLVKKKALLPGGG 426

HSP 2 Score: 52.373 bits (124), Expect = 3.696e-17
Identity = 29/104 (27.88%), Postives = 53/104 (50.96%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            K+G  +E++ELI G  +D+       P RIE AKI ++     PPK   +++V I    +     ++E++Y  ++ ++ K  G  +++ Q     D  N L +H
Sbjct:  212 KMGDTVEESELIEGALIDQKTMGRGAPTRIEKAKIGLIQFQISPPKTDMENQVIITDYAQMDRALKEERQYLLEICKQIKAAGCNVLLIQKSILRDAVNELALH 315

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.054e-17
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG + DT+L+ GI +DK++ HP MPKR++NAKIA+L    E  + +T  ++ I   ++     +QE+K   +MV +  + GA +V CQ G DD A + L    + AVR V
Sbjct:  207 GGSVADTKLVNGIVIDKEVVHPGMPKRVKNAKIAVLKAALEVKETETDAEIRITDPDQLMKFIEQEEKMLKEMVDRLAEAGANVVFCQKGIDDLAQYYLAKAGILAVRRV 316

HSP 2 Score: 77.0258 bits (188), Expect = 9.010e-14
Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 1

Query:  322 LLSAGLVGV------ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            L  AG++ V      ++E IA A G +I+   +E+T   LG+A LV E+  G   ++M++IE C N +AVTI IRGG++ +++E +RS+ DA+ V +  + +  +V G G
Sbjct:  305 LAKAGILAVRRVKQSDIEKIAKACGAKIITDLREITSADLGEAELVEERKVG--DEKMVFIEGCKNPKAVTILIRGGSEHVVDEVERSLQDAIKVVKTALESGKVVAGGG 412

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.247e-17
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 1

Query:  328 SAGLVGVE------LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +AG++ +E      +E +A+ TGG I   F      KLG   L+ E   G  +D++++    A   A TI +RG  + +++E +RS+HDALCV    +++   VYG G
Sbjct:  306 AAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGG 411

HSP 2 Score: 40.4318 bits (93), Expect = 6.247e-17
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQK 236
            K+GG L D+ L  G  +DK +   Q PKRIENAKI I     +  K K    +V +D+  K   +   E++   + V++
Sbjct:  204 KLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVER 281

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 6.247e-17
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 1

Query:  328 SAGLVGVE------LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +AG++ +E      +E +A+ TGG I   F      KLG   L+ E   G  +D++++    A   A TI +RG  + +++E +RS+HDALCV    +++   VYG G
Sbjct:  306 AAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGG 411

HSP 2 Score: 40.4318 bits (93), Expect = 6.247e-17
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 3

Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQK 236
            K+GG L D+ L  G  +DK +   Q PKRIENAKI I     +  K K    +V +D+  K   +   E++   + V++
Sbjct:  204 KLGGSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVER 281

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 8.119e-17
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 1

Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+  A ATG  +      L  + LG  G+  E   G   +R    + C  +++VTI +RGG K  IEE +RSI+DA+ +    I N+ IV G G
Sbjct:  320 DLKRTANATGALVQTSLFNLNDDVLGTCGVFEEVQIGN--ERYNIFKECLKTKSVTIILRGGAKQFIEEVERSINDAIMIVLRCITNSEIVPGAG 412

HSP 2 Score: 47.3654 bits (111), Expect = 8.119e-17
Identity = 30/107 (28.04%), Postives = 47/107 (43.93%), Query Frame = 3

Query:    9 GGRLEDTELIYGITVDKDMSH---PQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL 320
            GG   DT+LIYG+   K  S+    Q PK+  N KI +L    E    K   +V I+   ++ ++ Q E       +   KD GA +V+ +    D A       ++
Sbjct:  204 GGSCLDTQLIYGVAFKKTFSYAGFEQQPKKFINPKILLLNVELELKAEKENAEVRIENPNEYNSIVQAEWDIIFKKLNLIKDCGANIVLSKLPIGDIATQFFADHDI 310

[Close]

BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 63.5438 bits (153), Expect = 8.121e-17
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 1

Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +E + +A GG  +    +L P+ LG AGLV E + G  +++  +IE C N R+VT+ ++G NK  + + K +I D L   +N I +  +V G G
Sbjct:  321 MERLTLACGGVPLNSLDDLNPDCLGHAGLVYEYTLG--EEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAG 412

HSP 2 Score: 43.8986 bits (102), Expect = 8.121e-17
Identity = 33/112 (29.46%), Postives = 50/112 (44.64%), Query Frame = 3

Query:   24 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQK--------CKDVG-ATLVICQWGFDDEANHLLMHRNLPAVR 332
            DT LI G+ +D    HP M KR+E+A I       E  K +        + E+ + L + E+K+ +D V+K        C D     +VI Q G D  +   L    + A+R
Sbjct:  203 DTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIVELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALR 314

The following BLAST results are available for this feature:

BLAST of CF417075 vs. ExPASy Swiss-Prot

BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115


Match Name	E-value	Identity	Description
TCPD_AEDTR	2.188e-17	33.33	T-complex protein 1 subunit delta OS=Aedes triseri...	[more]
TCPB_MACFA	2.844e-17	33.33	T-complex protein 1 subunit beta OS=Macaca fascicu...	[more]
TCPB_HUMAN	2.844e-17	33.33	T-complex protein 1 subunit beta OS=Homo sapiens G...	[more]
TCPB_BOVIN	2.844e-17	33.33	T-complex protein 1 subunit beta OS=Bos taurus GN=...	[more]
TCPD_CAEEL	3.696e-17	35.42	T-complex protein 1 subunit delta OS=Caenorhabditi...	[more]
THSA_ARCFU	5.054e-17	39.09	Thermosome subunit alpha OS=Archaeoglobus fulgidus...	[more]
TCPB_RAT	6.247e-17	33.33	T-complex protein 1 subunit beta OS=Rattus norvegi...	[more]
TCPB_MOUSE	6.247e-17	33.33	T-complex protein 1 subunit beta OS=Mus musculus G...	[more]
TCPH_PLAF7	8.119e-17	35.79	T-complex protein 1 subunit eta OS=Plasmodium falc...	[more]
TCPZ_RABIT	8.121e-17	35.11	T-complex protein 1 subunit zeta OS=Oryctolagus cu...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG