CF417075

Overview
NameCF417075
Unique NameCF417075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:41..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.123e-17
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E I+ +TG + V   +  T +KLG   LV E +S G+   R    E    S  V+I +RG N ++I+ET+RS+HDALCV R+L R  ++V G G
Sbjct:  323 DIEFISRSTGAKPVADIEAFTEDKLGSCDLVEEVESSGSKTVRFSSRE---GSNTVSILVRGANDLVIDETERSLHDALCVLRSLFRVPALVPGGG 415          

HSP 2 Score: 41.2022 bits (95), Expect = 8.123e-17
Identity = 23/104 (22.12%), Postives = 51/104 (49.04%), Query Frame = 3
Query:    6 VGGRLEDTELIYGITVDK-DMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWG-FDDEANHLLMH 311
            +GG +EDT L  G+ ++   + +   P R+E AKI ++      PKP  ++ + ++   +   + ++E++Y   + +  K     +++ Q     D  + L +H
Sbjct:  203 LGGTIEDTTLANGLVLNNYAVKNAGGPSRMEKAKIGLIQFQLSAPKPDMENHIVVNDYRQMDKILKEERQYILGLAKAIKKSKCNVLLIQKSILRDAVSELALH 306          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.316e-16
Identity = 29/99 (29.29%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ----DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ IA A+G  I+     L  E+  +A ++ +      +    D ++ I++     + +I +RG N  M +E +RS+HDALCV + ++ + S+V G G
Sbjct:  315 DLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 413          

HSP 2 Score: 52.7582 bits (125), Expect = 2.316e-16
Identity = 37/113 (32.74%), Postives = 54/113 (47.79%), Query Frame = 3
Query:    3 KVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K  GR + +++LI G  ++  +    MPKRI NAKIA L    +  K K   +V I   EK   +RQ+E     + +QK    GA +++   G DD      +     AVR V
Sbjct:  199 KAHGRSQMESKLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRV 311          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.912e-16
Identity = 35/110 (31.82%), Postives = 54/110 (49.09%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            + G    ++EL+ G  +DKD  H  MP + + A + +L  P E  +      V I++ ++ Q    QE+      V +  D GA +V CQ G DD A H L  + + AVR
Sbjct:  208 QTGRSASESELLTGAVIDKDPVHDDMPVQFDEADVLLLNEPVEVEETDIDTNVSIESPDQLQKFLDQEEAQLKQKVDQIVDSGADVVFCQKGIDDLAQHYLAKQGILAVR 317          

HSP 2 Score: 38.891 bits (89), Expect = 3.912e-16
Identity = 21/96 (21.88%), Postives = 46/96 (47.92%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS-RAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++  +   TG  +V     +    LG+A + R+++       + Y+E   +    VT+ +RG    +++E +R + DAL V  + + +  ++ G G
Sbjct:  323 DIRFLKNITGAAVVSDLDSIEAAVLGRASVRRDEA-----GELFYVEGIGDDVHGVTLLLRGSTDHVVDELERGVQDALDVVASTVADGRVLAGGG 413          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 5.085e-16
Identity = 29/99 (29.29%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ----DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ IA A+G  I+     L  E+  +A ++ +      +    D ++ I++     + +I +RG N  M +E +RS+HDALCV + ++ + S+V G G
Sbjct:  315 DLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 413          

HSP 2 Score: 51.6026 bits (122), Expect = 5.085e-16
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 3
Query:    3 KVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K  GR + ++ LI G  ++  +    MPKRI NAKIA L    +  K K   +V I   EK   +RQ+E     + +QK    GA +++   G DD      +     AVR V
Sbjct:  199 KAHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRV 311          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 6.608e-16
Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEK------LGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ +A A+G  I+     L  E+      LG+A  V ++      D ++ I++     + +I +RG N  M +E +RS+HDALCV + ++ + S+V G G
Sbjct:  315 DLKCVAKASGATILSTLANLEGEETFEVTMLGQAEEVVQERI--CDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 413          

HSP 2 Score: 51.6026 bits (122), Expect = 6.608e-16
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 3
Query:    3 KVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K  GR + ++ LI G  ++  +    MPKRI NAKIA L    +  K K   +V I   EK   +RQ+E     + +QK    GA +++   G DD      +     AVR V
Sbjct:  199 KAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRV 311          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.588e-16
Identity = 27/99 (27.27%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ----DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ IA A+G  ++     L  E+  +A ++ +      +    D ++ I++     + ++ +RG N  M +E +RS+HDALCV + ++ + S+V G G
Sbjct:  315 DLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 413          

HSP 2 Score: 51.6026 bits (122), Expect = 8.588e-16
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 3
Query:    3 KVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K  GR + ++ LI G  ++  +    MPKRI NAKIA L    +  K K   +V I   EK   +RQ+E     + +QK    GA +++   G DD      +     AVR V
Sbjct:  199 KAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRV 311          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.450e-15
Identity = 32/101 (31.68%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEK------LGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ IA A+G  I+     L  E+      LG+A  V ++      D ++ I++     + +I +RG N  M +E +RS+HDALCV + ++ + S+V G G
Sbjct:  315 DLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERI--CDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 413          

HSP 2 Score: 50.447 bits (119), Expect = 1.450e-15
Identity = 36/113 (31.86%), Postives = 53/113 (46.90%), Query Frame = 3
Query:    3 KVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K  GR + ++ LI G  ++  +    MPKRI NAKIA L    +  K K   +V I   EK   +RQ+E     + ++K    GA +++   G DD      +     AVR V
Sbjct:  199 KAHGRSQVESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIEKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRV 311          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPZ_CAEEL (T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.886e-15
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYG 627
            +E + +A GG  V    +LTPE LG AGLV E S G  +++  +IE C   ++VT+ I+G NK  I + K +IHD L    N I + +++ G
Sbjct:  325 MERLQLAVGGEAVNSVDDLTPEDLGWAGLVYEHSLG--EEKYTFIEECRAPKSVTLLIKGPNKHTITQIKDAIHDGLRAVFNTIVDKAVLPG 414          

HSP 2 Score: 36.1946 bits (82), Expect = 1.886e-15
Identity = 27/116 (23.28%), Postives = 48/116 (41.38%), Query Frame = 3
Query:   24 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV-------------GATLVICQWGFDDEANHLLMHRNLPAVR 332
            DT L+ G+ +D    HP MP+ +++A I       E  K +    +   T ++ + L   E+++    V K  ++                +VI Q G D  +  LL    + A+R
Sbjct:  203 DTTLVRGLVLDHGARHPDMPRHVKDAYILTCNVSLEYEKTEVNSGLFYKTAKEREALLAAEREFITRRVHKIIELKKKVIDNSPDGKNKGFVVINQKGIDPPSLDLLASEGILALR 318          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.451e-15
Identity = 32/101 (31.68%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELT------PEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++  +A ATG  +V  F ++       P  LG A  V E+      D ++ I+    S AV++ +RG N  M++E +R++HDALC+ +  + +N++V G G
Sbjct:  318 DMRHVAKATGATLVTTFADMEGEETFDPAHLGSADEVVEERIA--DDDVILIKGTKTSSAVSLILRGANDYMLDEMERALHDALCIVKRTLESNTVVAGGG 416          

HSP 2 Score: 43.1282 bits (100), Expect = 2.451e-15
Identity = 28/110 (25.45%), Postives = 50/110 (45.45%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            G    D+ L+ G  ++   +   MP R+  AKIA L    +  K +   +V ++   + + +RQ+E     + ++K    GA +++   G DD A    +     AVR V
Sbjct:  205 GQSARDSYLLNGYALNTGRAAQGMPLRVSPAKIACLDFNLQKTKMQLGVQVVVNDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRV 314          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.453e-15
Identity = 31/109 (28.44%), Postives = 59/109 (54.13%), Query Frame = 3
Query:    6 VGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            +GG L ++E++ G+ ++KD+ HPQM + IEN +I I+  P E  K +++   +      F    + E++   +M ++   V   +V+C+ G  D A  +L   N+  +R
Sbjct:  200 LGGNLMESEVVDGVLINKDIIHPQMRRVIENPRIVIIESPLEYKKGESQTNYEFSKENDFTRALEIEEEQVREMCERIIGVRPDIVVCEKGISDLALSILFENNITGLR 308          

HSP 2 Score: 38.1206 bits (87), Expect = 2.453e-15
Identity = 24/96 (25.00%), Postives = 49/96 (51.04%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLG-KAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++  ++   G R V R ++L    +G   GL     +G  ++       CA+ +A ++ IRG  K +++E +R+  DA+ VA+++  +  +  G G
Sbjct:  314 DISRLSKVCGARSVSRPEDLEERHVGVSCGLFEYIKYG--EEYYCKFSRCAHPKACSVVIRGPTKDILDELERNFMDAVKVAKSIFISPKLCPGGG 407          
The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
TCPD_YARLI8.123e-1740.63T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
TCPA_MACFA2.316e-1629.29T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
THS2_HALVO3.912e-1631.82Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
TCPA_HUMAN5.085e-1629.29T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPA1_MOUSE6.608e-1630.69T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
TCPA_BOVIN8.588e-1627.27T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPA_CRIGR1.450e-1531.68T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPZ_CAEEL1.886e-1539.13T-complex protein 1 subunit zeta OS=Caenorhabditis... [more]
TCPA_ARATH2.451e-1531.68T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPG_ENCCU2.453e-1528.44T-complex protein 1 subunit gamma OS=Encephalitozo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG
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