CF417078

Overview
NameCF417078
Unique NameCF417078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:516..1219. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHS1_SORBI (Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.273e-62
Identity = 134/233 (57.51%), Postives = 158/233 (67.81%), Query Frame = 1
Query:    4 RFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGP-------SGV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            R MMYQQGCFAGGTVLR+AKDLAENN+GARVLVVCSEITAVTFRGP+++HLDS+VGQALF            PD  VERPL+QLVS SQ ILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L EAF PLGI+D+NSIFW+A P      GP       + V    +R  A  H  S      ++   C++    + ++           +G      FGFGPGLTV+
Sbjct:  160 RLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGADPDERVERPLFQLVSASQRILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALEEAFKPLGITDYNSIFWVAHP-----GGPAILDQVEAKVGLEKERMRATRHVLS---EYGNMSSACVLFILDEMRKRSAEDGQTTTGEGFDWGVLFGFGPGLTVE 384          

HSP 2 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 48/87 (55.17%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  446 HPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATHRRRAXXXXXXXXXXXXXXXKTVVLHSVP 706
            HPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ + T                    +TVVLHSVP
Sbjct:  307 HPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQTT-TGEGFDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSF_PETHY (Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 1.658e-62
Identity = 96/147 (65.31%), Postives = 110/147 (74.83%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWI 441
            KR MMYQ GC+ GGTVLRLAKDLAENNKGAR LVVCSEITA+TF  P+DT LD LVGQALF            P+  VE+PL++LVS +QT++PD    I G   +VGLTFHL KDVP L+S+NIEKSL E F PLGI DWNSIFW+
Sbjct:  155 KRLMMYQLGCYGGGTVLRLAKDLAENNKGARALVVCSEITAITFHAPSDTDLDVLVGQALFGDGAASVIIGSDPNLEVEKPLFELVSAAQTLVPDCGHKIYGKTSDVGLTFHLHKDVPRLVSQNIEKSLVEVFQPLGIFDWNSIFWV 301          

HSP 2 Score: 66.6254 bits (161), Expect = 1.658e-62
Identity = 39/86 (45.35%), Postives = 46/86 (53.49%), Query Frame = 2
Query:  446 HPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATHRRRAXXXXXXXXXXXXXXXKTVVLHSV 703
            H GG  ILDQVE            TR V+SEYGNM+SACVLF+LDEMRK S +E   T+                   +T+VLHSV
Sbjct:  303 HAGGREILDQVELKLGLKPEKLNVTRHVMSEYGNMASACVLFVLDEMRKTSTKEGFGTN-VEGLEWGVLCSFGPGLTIETIVLHSV 387          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSY_VIGUN (Chalcone synthase OS=Vigna unguiculata GN=CHS PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.171e-62
Identity = 138/232 (59.48%), Postives = 161/232 (69.40%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPSGV*TGPQ----RGEAEGHTSSVE*VR*HVKRLCLV-HP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   +E+PL++LV T+QTI PDS+GAIDGHLREVGLTFHLLKDVPG++SKNI K+LSEAF PL ISD+NSIFWIA P      GP+ +    Q    + E    T  V     ++   C+  H    EK V  G ++    K L     FGFGPGL+++
Sbjct:  155 KRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDPIPQIEKPLFELVWTAQTIAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIGKALSEAFDPLNISDYNSIFWIAHP-----GGPAILDQVAQKLGLKPEKMKATRDVLSDYGNMSSACVTFHLDEIEKSVENGLKT--TGKDLEWGVLFGFGPGLSLE 379          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHS6_SOYBN (Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.171e-62
Identity = 137/234 (58.55%), Postives = 160/234 (68.38%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPS-------GV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+MMYQQGCFAGGTVLRLAKDLAENN GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P    E+PL++LV T+QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNI+K+L EAF PLGI D+NSIFWIA P      GP+        +   P++ EA  H  S      ++   C++      ++    +      +GL     FGFGPGLTV+
Sbjct:  155 KRYMMYQQGCFAGGTVLRLAKDLAENNTGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDP-LPAEKPLFELVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIQKALVEAFQPLGIDDYNSIFWIAHP-----GGPAILDQVEAKLGLKPEKMEATRHVLSEYG---NMSSACVLFILDQMRKKSIENGLGTTGEGLEWGVLFGFGPGLTVE 379          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.171e-62
Identity = 130/231 (56.28%), Postives = 159/231 (68.83%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPSGV*TGPQ----RGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI+K+L EAF PLGISD+NSIFWIA P      GP+ +    Q    + E    T  V     ++   C++    + ++           +GL     FGFGPGLT++
Sbjct:  155 KRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGISDYNSIFWIAHP-----GGPAILDQVEQKLALKPEKMRATREVLSEYGNMSSACVLFILDEMRKKSTQDGLKTTGEGLEWGVLFGFGPGLTIE 380          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.171e-62
Identity = 130/231 (56.28%), Postives = 159/231 (68.83%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPSGV*TGPQ----RGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI K+L EAF PLGISD+NSIFWIA P      GP+ +    Q    + E    T  V     ++   C++    + ++    +      +GL     FGFGPGLT++
Sbjct:  155 KRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHP-----GGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIE 380          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.824e-62
Identity = 113/150 (75.33%), Postives = 129/150 (86.00%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP 450
            KR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI+K+L EAF PLGISD+NSIFWIA P
Sbjct:  155 KRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGISDYNSIFWIAHP 304          

HSP 2 Score: 24.6386 bits (52), Expect = 2.824e-62
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  446 HPGGPAILD 472
            HPGGPAILD
Sbjct:  303 HPGGPAILD 311          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSY_PHAVU (Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS17 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.836e-62
Identity = 134/231 (58.01%), Postives = 157/231 (67.97%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPSGV*TGPQ----RGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   +E+PL++LV T+QTI PDSDGAIDGHLREVGLTFHLLKDVPG++SKNI K+L EAF PL ISD+NSIFWIA P      GP+ +    Q    + E    T  V     ++   C++    + +            +GL     FGFGPGLT++
Sbjct:  155 KRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDPIPQIEKPLFELVWTAQTIAPDSDGAIDGHLREVGLTFHLLKDVPGIVSKNIGKALFEAFNPLNISDYNSIFWIAHP-----GGPAILDQVEQKLGLKPEKMKATRDVLSDYGNMSGACVLFILDEMRRKSAEKGLKTTGEGLEWGVLFGFGPGLTIE 380          

HSP 2 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 45/86 (52.33%), Postives = 49/86 (56.98%), Query Frame = 2
Query:  446 HPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATHRRRAXXXXXXXXXXXXXXXKTVVLHSV 703
            HPGGPAILDQVE           ATR VLS+YGNMS ACVLFILDEMR+KS E+   T                    +TVVLHSV
Sbjct:  303 HPGGPAILDQVEQKLGLKPEKMKATRDVLSDYGNMSGACVLFILDEMRRKSAEKGLKT-TGEGLEWGVLFGFGPGLTIETVVLHSV 387          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.703e-62
Identity = 130/231 (56.28%), Postives = 158/231 (68.40%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPSGV*TGPQ----RGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI K+L EAF PLGISD+NSIFWIA P      GP+ +    Q    + E    T  V     ++   C++    + ++           +GL     FGFGPGLT++
Sbjct:   31 KRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGISDYNSIFWIAHP-----GGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTIE 256          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHS5_MEDSA (Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.703e-62
Identity = 130/231 (56.28%), Postives = 158/231 (68.40%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPSGV*TGPQ----RGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI K+L EAF PLGISD+NSIFWIA P      GP+ +    Q    + E    T  V     ++   C++    + ++           +GL     FGFGPGLT++
Sbjct:  155 KRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGISDYNSIFWIAHP-----GGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTIE 380          
The following BLAST results are available for this feature:
BLAST of CF417078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
CHS1_SORBI1.273e-6257.51Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=... [more]
CHSF_PETHY1.658e-6265.31Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=... [more]
CHSY_VIGUN2.171e-6259.48Chalcone synthase OS=Vigna unguiculata GN=CHS PE=2... [more]
CHS6_SOYBN2.171e-6258.55Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV... [more]
CHS4_MEDSA2.171e-6256.28Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]
CHS2_MEDSA2.171e-6256.28Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]
CHS4_TRISU2.824e-6275.33Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHSY_PHAVU2.836e-6258.01Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS1... [more]
CHS7_MEDSA3.703e-6256.28Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHS5_MEDSA3.703e-6256.28Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-008 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417078 ID=CF417078; Name=CF417078; organism=Citrus sinensis; type=EST; length=708bp
AAGCGCTTCATGATGTACCAACAAGGATGTTTCGCCGGCGGCACTGTTCT
TCGCCTCGCTAAAGACTTGGCTGAGAACAACAAGGGCGCTCGCGTTCTTG
TTGTCTGTTCGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACT
CATCTTGATTCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGC
TGTGATCGTGGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATC
AGCTCGTGTCGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATT
GACGGACACTTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGT
CCCCGGCTTGATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCG
CCCCGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCCACCC
CGGTGGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAG
GGGAGAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACATG
TCAAGCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCTGT
TGAGGAAGCGAAAGCCACCCACCGGCGAAGGGCTTGNNTGGGGTGTGCTG
NTTCGGGTTCGGGCCGGGGCTCACCGTCCAAGACCGTTGTGCTGCACAGT
GTCCCCAT
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