CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.139e-38
Identity = 74/130 (56.92%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    1 MSGDSGISAFPEED-NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE-EYRKMVEKLYK 384
            MS   GISAFP+ D N+  W GTI G  DT +EG ++++S+SFP +YP+ PP + F +  +HPNVD+ GNICLDIL+DKWS+ Y+V+TILLS+QSLLGEPN +SPLN+QAA+LWS    EY++++ + YK
Sbjct:   42 MSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYK 171          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.479e-35
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    4 SGDSGISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKLYK 384
            S    ISAFP +DN +  W G I G KDT + G ++++SL FP +YPF PP +KF +  +HPNVD  GNICLDIL++KWS+ Y+V TILLS+QSLLGEPN  SPLN+ AA+LW ++ EEYRK V   Y+
Sbjct:   23 STTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLACYE 151          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.693e-31
Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            +G+S  P EDNI  W+  I G ++T FE   ++LSL F  +YP KPP VKF +  FHPNV   G+ICLDILQ++WS  YDV  IL SIQSLL EPN +SP NS AAQL+  N+ EY K V+++
Sbjct:   22 AGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQI 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.665e-30
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            +G+S  P E+NI  W   I G + T FE   ++L++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YDV +IL SIQSLL EPN +SP NSQAAQL+  N+ EY K V  +
Sbjct:   22 AGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAI 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.665e-30
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            +G+S  P E+NI  W   I G + T FE   ++L++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YDV +IL SIQSLL EPN +SP NSQAAQL+  N+ EY K V  +
Sbjct:   22 AGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAI 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.812e-29
Identity = 62/123 (50.41%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRKMVEKL 378
            +GIS  P+++NI  W   I G  DT ++G  ++LSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP NS+AA+++S N+ EY + V ++
Sbjct:   22 AGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREV 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            G+S  P E+NI  W   I G + T FE   ++L + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YDV +IL SIQSLL EPN +SP NSQAAQL+  N+ EY K V  +
Sbjct:   23 GVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAI 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            G+S  P E+NI  W   I G + T FE   ++L + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YDV +IL SIQSLL EPN +SP NSQAAQL+  N+ EY K V  +
Sbjct:   23 GVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAI 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            G+S  P E+NI  W   I G + T FE   ++L + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YDV +IL SIQSLL EPN +SP NSQAAQL+  N+ EY K V  +
Sbjct:   23 GVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAI 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            G+S  P E+NI  W   I G + T FE   ++L + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YDV +IL SIQSLL EPN +SP NSQAAQL+  N+ EY K V  +
Sbjct:   23 GVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAI 144          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC11_SCHPO1.139e-3856.92Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC11_YEAST4.479e-3556.59Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC1_CAEEL6.693e-3154.47Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2A_MOUSE9.665e-3052.03Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN9.665e-3052.03Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_MEDSA2.812e-2950.41Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBE2B_RAT6.265e-2952.46Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT6.265e-2952.46Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE6.265e-2952.46Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN6.265e-2952.46Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
back to top