CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.201e-21
Identity = 52/113 (46.02%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQG-SKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            GI A P+E N   +   I G SKD+ FEG  ++  L    +YP   PKV+F T  +HPNVD    I LDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +   + W   E
Sbjct:   22 GIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNE 134          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   16 GISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD-------------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 369
            G SA   +DN I+ W+  + G  DT++EG  ++  L FP DYP KPPK+KF +  +HPN+D  GN+C+ IL D             +W   + V TILLS+ S+L +PN  SP N  AA++   N  E++K V
Sbjct:   22 GFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKV 154          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.116e-20
Identity = 47/110 (42.73%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339
            +GI  +   D+I   KG  +G + T +EG  + + +  P DYPF+PPK+ F+T  +HPNV    G ICLDIL+D+WS  Y +++ L+S+QSLL  P  S+P ++Q AQ++
Sbjct:   22 AGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVY 131          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNV-DIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKL----YKPPSA*F*EDLKELEEGCEKGID 450
            ++N    +G I G  DT +EG  Y+L +  P  YPF PPKV+F T  +HPN+  + G ICLDIL+D+W++A  +RT+LLS+Q+LL       P ++  A  +    E  K   +L    Y        E  K++E  C  G D
Sbjct:   33 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFD 175          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNV-DIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKL----YKPPSA*F*EDLKELEEGCEKGID 450
            ++N    +G I G  DT +EG  Y+L +  P  YPF PPKV+F T  +HPN+  + G ICLDIL+D+W++A  +RT+LLS+Q+LL       P ++  A  +    E  K   +L    Y        E  K++E  C  G D
Sbjct:   33 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFD 175          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNV-DIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKL----YKPPSA*F*EDLKELEEGCEKGID 450
            ++N    +G I G  DT +EG  Y+L +  P  YPF PPKV+F T  +HPN+  + G ICLDIL+D+W++A  +RT+LLS+Q+LL       P ++  A  +    E  K   +L    Y        E  K++E  C  G D
Sbjct:   33 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFD 175          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   16 GISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE--EYRKMVEK 375
            G SA   +DN ++ W+  I G  DT++EG  ++  L+FP DYP +PPK+KF T  +HPNVD  G++C+ IL             +++W   + V TI++S+ S+L +PN  SP N  AA+ W      E+++ V +
Sbjct:   24 GFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 159          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   16 GISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE--EYRKMVEK 375
            G SA   +DN ++ W+  I G  DT++EG  ++  L+FP DYP +PPK+KF T  +HPNVD  G++C+ IL             +++W   + V TI++S+ S+L +PN  SP N  AA+ W      E+++ V +
Sbjct:   24 GFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 159          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   16 GISAFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE--EYRKMVEK 375
            G SA   +DN ++ W+  I G  DT++EG  ++  L+FP DYP +PPK+KF T  +HPNVD  G++C+ IL             +++W   + V TI++S+ S+L +PN  SP N  AA+ W      E+++ V +
Sbjct:   24 GFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 159          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.547e-19
Identity = 46/108 (42.59%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ 333
            SGI   P+ DN+    GTI G   T +EG  +++ ++ P+ YPF+PPK++F T  +HPN+    G ICLDIL+D+WS A  ++T L+SIQ+LL  P    P ++  A+
Sbjct:   21 SGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAE 128          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UE2NL_HUMAN8.201e-2146.02Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC7_CAEEL1.399e-2040.60Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC1_SCHPO3.116e-2042.73Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBE2K_MOUSE5.316e-2037.06Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN5.316e-2037.06Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN5.316e-2037.06Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UB2G1_RAT1.184e-1936.76Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE1.184e-1936.76Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN1.184e-1936.76Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBC27_ARATH1.547e-1942.59Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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