CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.638e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   43 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 369
            N+  W+  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  ++ ILL IQ LL EPNI  P  ++A  ++  N+ EY K V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.638e-19
Identity = 52/134 (38.81%), Postives = 69/134 (51.49%), Query Frame = 1
Query:   16 GISAFPE-EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVE 372
            GI A P+ E+NIF W   IQG  DT +    +   L FP DYP  PPK+ F     HPN+   G +C+ IL             +++WS    V  ILLS+ S+L EPNI S  N  A  LW  N+ E+ + V+
Sbjct:   23 GIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 53/156 (33.97%), Postives = 95/156 (60.90%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQ--DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYKPPSA*F*EDLKELEEG---CEKGIDTRSFS 465
            GI+A P  +++  W+  I+G +++V++G  ++L++ F ++Y + PP VKF T  FHPNVD + G  C+D L   +KW++ Y + +ILL++Q +L  P + +P+N +AA++    E   + + +L+  P     +D +EL +    C + I T SFS
Sbjct:   23 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFNRPLQ-MKDDSQELPKDPRKCIRPIKTTSFS 177          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   43 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVE---KLYKPP 390
            N++ W   I G   T +EG  Y L + F  DYP KPPK +F    FHPNV   G +CL IL ++  W  +  ++T+LL IQ LL  PN  SP       L+ +N+EEY K V+   K+Y PP
Sbjct:   37 NLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVYPPP 158          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   34 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            +E N+F W  +I G  DT++EG  +   +SFP +YP  PP V F +  +HPNV   G +C+ IL              ++W+  + V +I+LSI S+L  PN  SP N +AA+ W  N+ E+RK V +
Sbjct:   31 DEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSR 158          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 54/156 (34.62%), Postives = 95/156 (60.90%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYKPPSA*F*EDLKELEEGCEKGI---DTRSFS 465
            GI+A P  +++  W+  I+G +++V++G  ++L++ F ++Y + PP VKF T  FHPNVD + G  C+D L +  KW++ Y + +ILL++Q +L  P + +P+N +AA++ +  E   + + KL+  P     +D +EL +   K I    T SFS
Sbjct:   23 GITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLYRTILKLFNRPLQ-MKDDSQELPKDPHKCIGPTKTTSFS 177          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   16 GISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            GI A P  E+N F W+  I G +DT FE   +   LSFP DYP  PPK++F    FHPN+   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A+++W  ++E++ K+ +++
Sbjct:   23 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQI 158          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   16 GISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            GI A P  E+N F W+  I G +DT FE   +   LSFP DYP  PPK++F    FHPN+   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A+++W  ++E++ K+ +++
Sbjct:   23 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQI 158          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   16 GISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            GI A P  E+N F W+  I G +DT FE   +   LSFP DYP  PPK++F    FHPN+   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A+++W  ++E++ K+ +++
Sbjct:   23 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQI 158          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   16 GISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            GI A P  E+N F W+  I G +DT FE   +   LSFP DYP  PPK++F    FHPN+   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A+++W  ++E++ K+ +++
Sbjct:   23 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQI 158          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC9A_DANRE2.638e-1943.75SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC7_YEAST2.638e-1938.81Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2U_HUMAN4.500e-1933.97Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC9_DICDI4.500e-1941.80Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC14_ARATH4.500e-1937.50Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBE2U_MACFA5.877e-1934.62Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UB2G2_PONAB5.877e-1937.50Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE5.877e-1937.50Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN5.877e-1937.50Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN5.877e-1937.50Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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