CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.003e-18
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEK 375
            SA P+ DN++ W  TI G   T +EG  + L + FP+DYPFKPPK+ F+T  +H NVD  G++ ++IL+D WS A  +  +L +I+S+  +P   SP     A+L+    E    V K
Sbjct:   57 SAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAK 174          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 1
Query:   34 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDI-YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN-----QEEYRKMVEKLY 381
            +E +++ W   I+G  DT +E  ++ L +S P +YP +PP +KF T  FHPN+    G ICLD+L+  WS+ Y ++++  SI +LL  P   SPLN  A  L  N      +   +M  +LY
Sbjct:   26 DESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRLY 147          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   55 WKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE-EYRKMV 369
            WK  I G   T +EG  Y+L+++FP +YP +PPK +F    FHPNV   G +CL IL ++  W  A  ++ ILL IQ LL +PNI+SP  ++A  ++   + EY K V
Sbjct:   41 WKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRV 148          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 1
Query:   34 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            +E NIF W  TI G  DT++EG  +   ++FP +YP  PP V+F +  +HPNV   G +C+ IL              ++W+  + V +I+LSI S+L  PN  SP N +AA+ W   ++E++K V +
Sbjct:   30 DEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSR 157          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:   34 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            +E NIF W  TI G  DT++EG  +   +SFP +YP  PP V+F +  +HPNV   G +C+ IL              ++W+  + V +I+LSI S+L  PN  SP N +AA+ W   ++E++K V +
Sbjct:   30 DEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSR 157          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   10 DSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDI-YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 336
            D  I    ++ NIF W   I+G  +T +EG  ++L+ S P  YP +PP+V+F T  FHPNV    G ICLDIL++ WS A+ ++++  +I +L+  P   SPLN  +  L
Sbjct:   22 DPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 131          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.917e-18
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE-EYRKMVEKLYKPPS 393
            ++NIF WK  I+G +++++E   + L +   NDYP+  PKVKF T   H NV+  G+ICL+IL +D W+++ ++ +I+ SI  LL +PN   P NS+ A L+ N +  Y K +    K  S
Sbjct:   33 DENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHS 153          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.810e-18
Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 1
Query:   28 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL------------DILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            F ++ N+F W+ TI G  +T+++G  +   +SFP +YP  PP V+F +  +HPNV   G +C+            ++  ++W+  + V +I+LSI S+L  PN  SP N +AA+ W   Q+E++K V +
Sbjct:   31 FVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRR 159          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.810e-18
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 345
            +DN+F W  T  G  D+V+ G ++  SL FP DYPF+PP ++F T  +HPN D  GN+CL IL Q  +  +  +R++L  I  LL EPN   PL +  A+ + N
Sbjct:   33 DDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRN 136          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   43 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 363
            N+  W+  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  +  + + IQ LL EPNI  P  ++A  ++  N+ EY K
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEK 146          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
COP10_ARATH1.003e-1839.83Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBCX_DICDI1.710e-1836.89Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC9_SCHPO1.710e-1842.59SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC7_ARATH1.710e-1836.72Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC13_ARATH1.710e-1837.50Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC21_ARATH2.233e-1840.00Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC1_MIMIV2.917e-1838.84Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC7_WHEAT3.810e-1834.11Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC14_SCHPO3.810e-1842.31Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC9_MESAU8.487e-1840.91SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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