CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 1
Query:   10 DSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKV---------------KFETGCFHPNVDIY-GNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 345
            ++GI    +E+N+   KG I+G + T + G  + + +  P  YPF+PPKV               KF T  +HPN+    G ICLDIL+DKW+++  +RT+LLS+Q++L  P  S P ++  A+ + N
Sbjct:   38 EAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFIN 165          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.601e-16
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEK 375
            EDN+  W   ++G  DT++EG  ++  + FP  YP++PP++ F +  +HPN+   G +C+ IL           WS A  + T+LLS+ SLL EPN  SP N  AA      + YRK + K
Sbjct:   27 EDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAA------KSYRKYLYK 141          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 357
            GI   P E++I   +  I+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   30 GIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 45/115 (39.13%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 357
            GI   P E++I   + +I+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   30 GIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEK 375
            E+++  W   ++G  DT++EG  ++  ++FP +YP+ PP++ F +  +HPN+   G +C+ IL           WS A  + TILLS+ SLL EPN  SP N  AA      + YRK++ K
Sbjct:   27 ENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAA------KSYRKLMHK 141          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 357
            GI   P E++I   +  I+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   30 GIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.657e-16
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL----QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKM 366
            GI+ + E+D +   +  I G  +T +E   + L +  P  YPF+PP+V+F T  +HPN+D  G ICLDIL    +  W  + ++ T+L SIQ L+ EPN   PL +      S++ +Y K+
Sbjct:   21 GITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADI----SSEFKYNKI 137          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.082e-16
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL----QDKWSSAYDVRTILLSIQSLLGEPNISSPL 315
            G+  +  E N+   +  I G   + +EG  + L +  P  YPF+PPK++F T  +HPN+D  G ICLDIL    +  W  A ++ T+L SIQ L+ EPN   PL
Sbjct:   21 GVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPL 124          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.082e-16
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   73 GSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDI-YGNICLDILQDKWSSAYDVRTIL-LSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYK 384
            G KDT +E   +RL +  P++YP+K P + F    FHPN+DI  G+ICLD++   WS  YD+  I+   I  LL EPN S PLN++AA L   Q   +K+ E+  K
Sbjct:   38 GPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATL---QLRDKKLYEEKIK 140          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-15
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ 333
            S  SA   +DN+  WK T+QG + + FE   + + +  P DYPFKPP +KF T  +HPN+    G IC ++    WS    +  +L +I+S+L +PN  +PL ++ AQ
Sbjct:   20 SWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF-STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQ 126          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC21_CAEEL1.225e-1635.94Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UBC_ASFM21.601e-1637.19Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2S_XENTR2.730e-1639.13Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBE2S_RANCA2.730e-1639.13Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBC_ASFWA3.566e-1636.36Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UB2SB_XENLA3.566e-1639.13Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2T_MOUSE4.657e-1636.36Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBE2T_XENLA6.082e-1639.42Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC8_YEAST6.082e-1643.40Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBCB_DICDI1.037e-1537.96Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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