CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-15
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   79 KDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA 330
            ++ V+ G  +R S+ F + YP +PP VK     +HPN+D  GNICL++L++ WS   D++T++L +  L  EPN S PLN QAA
Sbjct:   68 EEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAA 151          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   43 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 336
            ++F WK  I+G  +T +EG ++ L +     YP  PP V F+T   HPN+    G +C+DIL+  WS A+ +++  L+I SLL   + SSPLN  AA+L
Sbjct:   33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKL 131          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   73 GSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLWSNQ-EEYRKMVEKLYKPPSA*F*EDLKELEEGCEKGIDTRSFSFF 471
            G + T +EG  +++ +  P+ YPFK P + F    FHPN+D   G +CLD++   W++ YD+  I  S +  LL  PN   PLN  AA ++ ++ EEY++ +++  +  +    E LKE EEG        S S F
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT--EEALKEQEEGTGDSSSESSMSDF 173          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   73 GSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLWSNQ-EEYRKMVEKLYKPPSA*F*EDLKELEEGCEKGIDTRSFSFF 471
            G + T +EG  +++ +  P+ YPFK P + F    FHPN+D   G +CLD++   W++ YD+  I  S +  LL  PN   PLN  AA ++ ++ EEY++ +++  +  +    E LKE EEG        S S F
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT--EEALKEQEEGTGDSSSESSMSDF 173          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   73 GSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLWSNQ-EEYRKMVEKLYKPPSA*F*EDLKELEEGCEKGIDTRSFSFF 471
            G + T +EG  +++ +  P+ YPFK P + F    FHPN+D   G +CLD++   W++ YD+  I  S +  LL  PN   PLN  AA ++ ++ EEY++ +++  +  +    E LKE EEG        S S F
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT--EEALKEQEEGTGDSSSESSMSDF 173          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL----QDKWSSAYDVRTILLSIQSLLGEPNISSPL 315
            GI+ + ++D +   +  I G  +T +E   ++L +  P  YPF+PP+++F T  +HPN+D  G ICLD+L    +  W  + ++ T+L SIQ L+ EPN   PL
Sbjct:   21 GITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 124          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   91 FEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 336
            ++G ++R + +F   YP  PPKV      FHPN+D +G ICL+IL++ WS A D++ I+L + SL  EPN + PLN +AA++
Sbjct:   76 YKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEV 157          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.942e-15
Identity = 49/133 (36.84%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   10 DSGI-SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKF-------------------ETGCF---HPNVDI-YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 336
            D+GI    P ED +F W   I+G   + FE   ++L +  P +YP  PPK+KF                      C+   HPNV+   G ICLDILQ KWS A+ +++ L++I  LL  P   SPLN   A L
Sbjct:   28 DTGIVDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANL 160          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.942e-15
Identity = 31/85 (36.47%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   82 DTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 336
            D +++   ++ +++ P+ YP+ PPKV  +T  +HPN+D+ G++CL+IL+  W    ++ T++  + +L  EPN   PLN  AAQL
Sbjct:  116 DGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQL 200          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.942e-15
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 357
            GI   P E++I   +  I+G + T +    +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   30 GIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC12_ASHGO1.037e-1544.05NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBC16_SCHPO1.355e-1540.40Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBE2H_MOUSE1.770e-1534.56Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN1.770e-1534.56Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN1.770e-1534.56Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBE2T_HUMAN2.311e-1536.54Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC12_CANGA2.311e-1543.90NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBCX_PICAN3.942e-1536.84Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC12_DICDI3.942e-1536.47NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UB2SC_XENLA3.942e-1538.26Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
back to top