CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL----QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMV 369
            GI+ + + D +   +  I G  +T +E   ++L +  P  YPF+PP+++F T  +HPN+D  G ICLD+L    +  W  + ++ T+L  IQ L+ EPN   PL +      S++ +Y K V
Sbjct:   21 GITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADI----SSEFKYNKPV 138          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   28 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 345
            F + D++  +K  I   +   ++G ++  S      YP  PPKVK ET  +HPN+D+ GN+CL+IL++ W     + +I+  +Q L  EPN   PLN +AA++  N
Sbjct:   51 FSDHDDLLNFKLVICPDEG-FYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQN 155          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   28 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 345
            F + D++  +K  I   +   ++G ++  S      YP  PPKVK ET  +HPN+D+ GN+CL+IL++ W     + +I+  +Q L  EPN   PLN +AA++  N
Sbjct:   51 FSDHDDLLNFKLVICPDEG-FYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQN 155          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.783e-15
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   82 DTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ--------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            D+++ G   +  + FP+ YP +PP +KF +  FHPN+   G +C+ IL+              DKW+   ++RTI++SI  +L  PNISSP N  A+ ++  N EEY K V ++
Sbjct:   77 DSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRI 190          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.783e-15
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLY 381
            GI  +P E++I     +I+G + T + G  +R+ L    D+P  PP+  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A +L    E+Y++   + +
Sbjct:   30 GIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLL--LEDYKEYASRAH 149          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.783e-15
Identity = 39/117 (33.33%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   28 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEYRKMVEK 375
            FP+ +++  +K  I   +    +G  +  +    ++YP +PPKVK  T  +HPN+D+ GN+CL+IL++ W+   ++ +I+  +Q L  EPN   PLN +AA  L +N+ ++   V+K
Sbjct:   48 FPDPNDLLNFKLIISPDEGFYRDG-RFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKK 163          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEYRK 363
            GI+  P E++I   +  + G   T +EG  ++  L   +D+P  PPK  F T  FHPNV   G IC++ L+  W+    ++ ILL+I+ LL  PN  S LN  A++ L  N ++Y K
Sbjct:   28 GITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCK 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   73 GSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLW-----SNQEEYRKMVEKLYKP 387
            G KD+++EG  +++ +  P+ YP+K P V F T  +HPNVD + G++CLD++   WS  +D+  +  + +  LL  PN S PLN +AA L      + ++  ++  EK  KP
Sbjct:   38 GPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEKYAKP 149          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/119 (31.09%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   34 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRKMVEKLYK 384
            +E N+  W+G I        +G  +R+ ++FP +YPFKPPK+ F+T  +HPN+D  G +CL ++  + W  A     ++ S+ +L+ +P    PL +  A+ +S +++++ K  E+  K
Sbjct:   28 DEANLLTWQGLIVPDNPPYDKGA-FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTK 145          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/119 (31.09%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   34 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRKMVEKLYK 384
            +E N+  W+G I        +G  +R+ ++FP +YPFKPPK+ F+T  +HPN+D  G +CL ++  + W  A     ++ S+ +L+ +P    PL +  A+ +S +++++ K  E+  K
Sbjct:   28 DEANLLTWQGLIVPDNPPYDKGA-FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTK 145          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBE2T_BOVIN6.725e-1533.61Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBC12_XENTR6.725e-1535.85NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA6.725e-1535.85NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
Y1A1_ENCCU8.783e-1535.96Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBE2S_DANRE8.783e-1534.43Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBC12_DROME8.783e-1533.33NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBE2S_DICDI1.498e-1436.75Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBC5_ARATH2.555e-1435.71Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UB2L3_PONAB2.555e-1431.09Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE2.555e-1431.09Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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