CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.163e-13
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  115 SLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 354
            +L F   YP +PPKV      FHPN+D+ GN+CL+IL++ WS A D+++I+  +  L  EPN + PLN  AA+L    E+
Sbjct:   83 NLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEK 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 2.825e-13
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   34 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRKMVEK 375
            ++ N+  W   +   +   +    + L +SFP +YPFKPP +KF T  +HPNVD  G ICL I+  + W        +L ++  L+  PNI  PL    A L + N E +RK  E+
Sbjct:   28 DDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 142          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   91 FEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ 333
            + G  Y  ++   + YP +PP VK     +HPN+DI GN+CL++L++ W+ A D+++I++ I  L  EPN   PLN  AA+
Sbjct:   72 YAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAK 152          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 1
Query:   25 AFPEEDN-IFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA 330
            +FP   N +  ++ TI+  +     G  +  S    N YP + PKVK +T  +HPN+D+ GN+CL+IL++ W    ++ T++  +  L  EPN   PLN +AA
Sbjct:   52 SFPNGKNDLMNFEVTIKPDEGYYLSGN-FVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAA 153          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.402e-12
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.402e-12
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.402e-12
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.402e-12
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 1
Query:   40 DNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTIL-LSIQSLLGEPNISSPLNSQAAQL 336
            DN+  +     G  +T + G  +++ +  P++YP+K P + F    FHPN+D + G++CLD++   WS  +D+  I  + +  LL  PN S PLN +AA L
Sbjct:   27 DNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAAL 127          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   73 GSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTIL-LSIQSLLGEPNISSPLNSQAAQLW-----SNQEEYRKMVEKLYKPPSA*F*EDLKELEE 429
            G KD++++G  +++ +     YP+K P + F    +HPNVD + G++CLD++   WS  +D+  I  + +  LL  PN S PLN +AA L      + + + ++  E+  KP      ED+   EE
Sbjct:   38 GPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYAKP------EDISPEEE 157          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 1
Query:    4 SGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEYRK 363
            S   GI     +++       I+G   T +E   +R+ L+  +D+P  PPK  F T  FHPNV   G IC++ L+  W+ +  +R +L  ++ LL EP   S LN QA + L  N +EY +
Sbjct:   25 SPPDGIKVVVNDEDFSQICADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYAR 145          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC12_YEAST2.163e-1343.75NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UB2L6_HUMAN2.825e-1334.48Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UBC12_KLULA4.819e-1339.51NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UB12L_ARATH8.220e-1334.95Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBE2S_DROSI1.402e-1230.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE1.402e-1230.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME1.402e-1230.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBC8_SCHPO1.402e-1234.65Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBC4_WHEAT1.831e-1231.75Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC22_ARATH1.831e-1233.88Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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