CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 35/118 (29.66%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQ-EEYRKMVEKLYK 384
            ++++  W G +   K    +G  +R+ ++FP  YPF PPK+ F+T  +HPNVD  G +CL I+  D W        +L ++ +++  P    PL S  A+ +  + +++ K  E+  K
Sbjct:   29 DESLLMWTGLLVPEKAPYNKGA-FRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTK 145          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 1
Query:   40 DNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLWSNQE-----EYRKMVEKLYKP 387
            D++  +  T  G  D++++G  +++ +  P  YP+K P V F    +HPNVD   G +CLD++   WS  +D+  +  S +  LL  PN S P N +AA L          + ++  EK  KP
Sbjct:   27 DDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEKYAKP 149          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.328e-12
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAIGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPP 390
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++    + +  +  +M+ +++  P+
Sbjct:   33 GIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBE2S_DROYA2.392e-1230.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROER2.392e-1230.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBE2S_DROAN3.124e-1230.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBC84_DROME4.080e-1229.66Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBC6_ARATH4.080e-1231.71Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBE2S_DROWI5.328e-1230.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBE2S_DROVI6.959e-1230.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBE2S_DROMO6.959e-1230.23Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBE2S_DROGR6.959e-1230.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBE2S_DROPS1.187e-1130.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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