CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417094_ssr461 microsatellite CF417094_ssr461:461..472. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.927e-28
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            GIS  P  DNI  W   I G  +T FE   +RL+L+F + YP KPP V+F +  FHPN+   G +CLDILQ++WS  YDV  IL S+QSLL +PN +SP N  AAQL+  N +EY + V+K
Sbjct:   23 GISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKK 143          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            +GIS  P E+NI  W+  I G  D+++EG  ++LSL F  +YP   P VKF +  FHPNV   G+ICLDILQ++WS  YD+  IL SIQSLL +PN +SP NS++A+L+  N+ EY + V+++
Sbjct:   22 AGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEI 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 60/122 (49.18%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            +G+SA P  DN+  W   I G  DT FE   +RL + F   YP KPP+VKF +  FHPNV   G +CLDILQ++WS  YDV  +L SIQSLL +PN  SP N +A+ L+  N+ EY K V +
Sbjct:   22 AGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRE 143          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 62/122 (50.82%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            +G+SA P  DN+  W   I G  DT FE   +RL + F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  IL SIQSLL +PN SSP N +A+ L+  N++EY K V +
Sbjct:   22 AGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRE 143          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 62/122 (50.82%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            +G+SA P  DN+  W   I G  DT FE   +RL + F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  IL SIQSLL +PN SSP N +A+ L+  N++EY K V +
Sbjct:   22 AGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRE 143          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 63/140 (45.00%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKLYKPPSA*F*EDLKELEEG 432
            G+SA P  DN+  W   I G  DT +E   +RL L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YDV +IL SIQSL  +PN +SP N +AA L+  ++ +Y K V++  +     + +DLK++++G
Sbjct:   23 GVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKS---WEDDLKDMDDG 159          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 369
            G+SA P  DN+  W   I G  +T FE   +R+ L F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  IL S+QSLL +PN SSP N +A+ L+  ++++Y K V
Sbjct:   23 GVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRV 141          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            +G+SA P  DN+  W   I G  DT FE   +RL + F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  +L SIQSLL +PN  S  N +A+ L+  N++EY K V +
Sbjct:   22 AGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRE 143          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 61/120 (50.83%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVE 372
            GIS  P  DN+  W   I G  DT FE   ++L L+F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA L+  N +EY + V+
Sbjct:   23 GISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVK 142          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.706e-26
Identity = 60/121 (49.59%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            G+SA P  DN+  W   I G  DT +E   +RL L F  DYP KPP VKF +  FHPNV   G ICLDILQ++W+  YDV +IL SIQSL  +PN +SP N +AA L+  ++ +Y K V++
Sbjct:   23 GVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKE 143          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC2_CRYNE6.927e-2850.41Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC2_DICDI1.182e-2748.78Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_TRIHA1.543e-2749.18Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI1.543e-2750.82Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU1.543e-2750.82Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_ASHGO2.632e-2745.00Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_YARLI7.658e-2748.74Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_NEUCR7.658e-2748.36Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_USTMA1.000e-2650.83Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_CANGA1.706e-2649.59Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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