CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            GI+A P+E+N   +   + G  D+ FEG  ++L L  P DYP   PKV+F T  +HPN+D  G ICLD+L+DKWS A  +RTILLSIQ+LL  PN   PL +  A+LW   E
Sbjct:   22 GINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNE 133          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.964e-26
Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            G+SA P  DN+  W   I G  DT +E   +RL L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YDV +IL SIQSL  +PN +SP N +AA L+  ++ +Y K V++
Sbjct:   23 GVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.964e-26
Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            G+SA P  DN+  W   I G  DT +E   +RL L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YDV +IL SIQSL  +PN +SP N +AA L+  ++ +Y K V++
Sbjct:   23 GVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKE 143          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W + E
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNE 133          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.464e-25
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.464e-25
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.464e-25
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.464e-25
Identity = 56/113 (49.56%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 354
            GISA P  DN   +K  I G  D+ FEG  + L L   +DYP   PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E+
Sbjct:   22 GISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEK 134          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.464e-25
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBE2N_DROME3.801e-2649.11Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC2_YEAST4.964e-2648.76Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_KLULA4.964e-2648.76Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBE2N_RAT1.886e-2549.11Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB2.464e-2549.11Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE2.464e-2549.11Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN2.464e-2549.11Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_DICDI2.464e-2549.56Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_BOVIN2.464e-2549.11Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_MACFA3.218e-2549.11Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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