CF417094
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 5.488e-25 Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 1 Query: 16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351 GI A P EDN+ +K T++G + + +EG ++ L L P++YP PP V+F T +HPNVD G ICL L+ WS A +RT+LLSIQ+L+G PN PL++ A++W E Sbjct: 21 GIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENE 132
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25 Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1 Query: 16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351 GISA P EDN+ + I G + +EG ++L L P +YP PKV+F T +HPN+D G ICLDIL+DKWS A +RT+LLSIQ+LL PN PL+ A+ W + E Sbjct: 24 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNE 135
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25 Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = 1 Query: 22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 363 SA P D++F W+ TI G D+ ++G + L++ FP DYPFKPPK+ F T +HPN++ G+ICLDIL+ +WS A V +LLSI SLL +PN PL AQ++ S++E+Y + Sbjct: 22 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25 Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = 1 Query: 22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 363 SA P D++F W+ TI G D+ ++G + L++ FP DYPFKPPK+ F T +HPN++ G+ICLDIL+ +WS A V +LLSI SLL +PN PL AQ++ S++E+Y + Sbjct: 22 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25 Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = 1 Query: 22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 363 SA P D++F W+ TI G D+ ++G + L++ FP DYPFKPPK+ F T +HPN++ G+ICLDIL+ +WS A V +LLSI SLL +PN PL AQ++ S++E+Y + Sbjct: 22 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.597e-24 Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1 Query: 13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339 S SA P D++F W+ TI G D+ + G + LS+ FP DYPFKPPKV F T +HPN++ G+ICLDIL+D+WS A + +LLSI SLL +PN PL + A ++ Sbjct: 19 SSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVY 127
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24 Identity = 52/119 (43.70%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375 SA P D++F W+ TI G D+ ++G + L++ FP DYPFKPPKV F T +HPN++ G+ICLDIL+ +WS A + +LLSI SLL +PN PL + A+++ +++E+Y ++ + Sbjct: 22 SAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 140
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24 Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 1 Query: 16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351 GISA P E+N+ + I G + +EG ++L L P +YP PKV+F T +HPN+D G ICLDIL+DKWS A +RT+LLSIQ+LL PN PL+ A+ W + E Sbjct: 24 GISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNE 135
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24 Identity = 52/119 (43.70%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375 SA P D++F W+ TI G D+ ++G + L++ FP DYPFKPPKV F T +HPN++ G+ICLDIL+ +WS A + +LLSI SLL +PN PL + A+++ +++E+Y ++ + Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24 Identity = 52/119 (43.70%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375 SA P D++F W+ TI G D+ ++G + L++ FP DYPFKPPKV F T +HPN++ G+ICLDIL+ +WS A + +LLSI SLL +PN PL + A+++ +++E+Y ++ + Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140 The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 224
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bpback to top |