CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.068e-24
Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 366
            SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:   22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.068e-24
Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 366
            SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:   22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.068e-24
Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 366
            SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:   22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 51/119 (42.86%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            SA P  D++F W+ TI G  ++ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++E Y ++  +
Sbjct:   22 SAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 366
            SA P  +++F W+ TI G  ++ + G  + +++ FP DYPFKPPKV F T  FHPN++  GNICLDIL+D+WS A  +  +LLSI SLL +PN   PL  + A ++ +++ +Y  M
Sbjct:   22 SAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAM 137          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.035e-23
Identity = 51/110 (46.36%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            SA P  D+++ W+ +I G  D+ + G  + LS+ FP DYPFKPPKV F T  +HPN++  GNICLDIL+D+WS A  +  +LLSI SLL + N   PL  + AQ++   +
Sbjct:   23 SAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDK 132          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.352e-23
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339
            S  SA P  +++F W+ TI G  D+ + G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+D+WS A  +  +LLSI S+L +PN   PL  + A ++
Sbjct:   19 SSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVY 127          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.352e-23
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRKMVEK 375
            E++IF W+ TI G  D+ + G  + +S+ F +DYPFKPPKV F+T  +HPN+D  G+ICLDIL+++WS A     +LLSI SLL +PN + PL  + A L+  ++ +Y    +K
Sbjct:   28 EEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQK 141          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339
            SA P  D++F W+ TI G  D+ F G  + +++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+++WS A  V  +LLSI SLL +PN   PL  + A ++
Sbjct:   22 SAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIY 127          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339
            S  SA P  +++F W+ TI G  D+ + G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+D+WS A  +  +LLSI S+L +PN   PL  + A ++
Sbjct:   19 SSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVY 127          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UB2D3_MACFA6.068e-2443.97Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN6.068e-2443.97Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG6.068e-2443.97Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC2_CAEEL7.925e-2442.86Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC29_ARATH7.925e-2444.83Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC5_YEAST1.035e-2346.36Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC1_MAGGR1.352e-2345.87Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC12_ARATH1.352e-2344.74Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC30_ARATH1.766e-2348.11Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC1_COLGL1.766e-2345.87Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
back to top