CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417094_ssr461 microsatellite CF417094_ssr461:461..472. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.012e-23
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            SA P  +++F W+ TI G  D+ + G  + +++ FP DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++   +
Sbjct:   22 SAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 131          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.012e-23
Identity = 50/106 (47.17%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339
            SA P  +++F W+ TI G  D+ + G  + +S+ FP DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:   22 SAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.012e-23
Identity = 50/106 (47.17%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339
            SA P  +++F W+ TI G  D+ + G  + +++ FP DYPFKPPKV F T  FHPNV+  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:   22 SAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.933e-23
Identity = 50/116 (43.10%), Postives = 79/116 (68.10%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 366
            SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++   +ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:   22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.137e-23
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339
            S  SA P  +++F W+ TI G  ++ + G  + +S+ FP DYPFKPPKV F+T  +HPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:   19 SNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.709e-23
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339
            SA P  D+++ W+ +I G  D+ + G  + LS+ FP DYPFKPPK+ F T  +HPN++  GNICLDIL+D+WS A  +  +LLSI SLL + N   PL  + A ++
Sbjct:   23 SAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIY 128          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 384
            SA P+ DNI+ W+ TI G   +V+EG  + L ++F  DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M  +  K
Sbjct:   76 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK 197          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 384
            SA P+ DNI+ W+ TI G   +V+EG  + L ++F  DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M  +  K
Sbjct:   76 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK 197          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 345
            +S +S  S     +NI+ W   I+G   T +EG  + LS+ FP DYPFKPPK  F+T  +HPN++  G+IC++IL+DKW+ A  V  +LLSI  LL +PN   PL  +  QL+ N
Sbjct:   21 ISKESLFSIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKN 135          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 351
            SA P  +++F W+ TI G  ++ + G  + +++ FP DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++   +
Sbjct:   22 SAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 131          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC9_ARATH3.012e-2344.55SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_SOLLC3.012e-2347.17Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH3.012e-2347.17Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UB2D3_BOVIN3.933e-2343.10Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC11_ARATH5.137e-2344.95Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC4_YEAST6.709e-2346.23Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UB2E2_MOUSE8.762e-2345.90Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN8.762e-2345.90Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBC31_ARATH1.144e-2244.35Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC10_ARATH1.144e-2243.64Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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