CF417095

Overview
NameCF417095
Unique NameCF417095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig433 contig Csv1_Contig433:1..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 1.731e-110
Identity = 195/211 (92.42%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 398.282 bits (1022), Expect = 1.731e-110
Identity = 195/211 (92.42%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 1.731e-110
Identity = 195/211 (92.42%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB7_ARATH (Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.260e-110
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB3_ELEIN (Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 2.952e-110
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB2_ORYSJ (Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 2.952e-110
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 2.952e-110
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 2.952e-110
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 2.952e-110
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSAMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 397.127 bits (1019), Expect = 3.855e-110
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 333
The following BLAST results are available for this feature:
BLAST of CF417095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB2_ELEIN1.731e-11092.42Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 P... [more]
TBB1_ORYSJ1.731e-11092.42Tubulin beta-1 chain OS=Oryza sativa subsp. japoni... [more]
TBB1_LUPAL1.731e-11092.42Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=... [more]
TBB7_ARATH2.260e-11091.94Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_ELEIN2.952e-11091.94Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 P... [more]
TBB2_ORYSJ2.952e-11091.94Tubulin beta-2 chain OS=Oryza sativa subsp. japoni... [more]
TBB2_MAIZE2.952e-11091.94Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB2_ARATH2.952e-11091.94Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB1_MAIZE2.952e-11091.94Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=... [more]
TBB6_ARATH3.855e-11091.94Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-025 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417095 ID=CF417095; Name=CF417095; organism=Citrus sinensis; type=EST; length=635bp
AGAAGCCGAGAACTGCGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTC
TGGGAGGAGGGACGGGTTCCGGGATGGGAACTTTGTTGATATCAAAGATA
AGAGAGGAATACCCGGATAGAATGATGCTTACTTTCTCAGTTTTCCCATC
TCCTAAGGTCTCTGATACTGTTGTTGAGCCTTACAATGCTACTCTCTCTG
TACATCAGCTAGTTGAAAATGCAGATGAGTGTATGGTTCTTGATAATGAA
GCCCTTTATGACATCTGTTTCCGCACTCTCAAACTCAGCACTCCAAGCTT
TGGTGATCTGAATCATTTGATATCTGCTACAATGTCTGGAGTTACCTGTT
GTTTGAGATTCCCTGGTCAATTAAACTCTGACCTTAGAAAGCTTGCTGTT
AATCTCATTCCTTTTCCTAGGCTTCACTTTTTCATGGTGGGATTTGCTCC
CTTGACATCCCGTGGCTCTCAGCAATATAGATCTTTGACTGTCCCGGAGC
TCACCCAGCAAATGTGGGATGCTAAGAATATGATGTGTGCAGCTGATCCT
CGCCATGGTCGTTACTTGACTGCCTCAGCCATGTTTAGGGGCAAAATGAG
CACTAAAGAAGTTGATGAGCAGATGATCAATGTGC
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