CF417095

Overview
NameCF417095
Unique NameCF417095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig433 contig Csv1_Contig433:1..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.465e-109
Identity = 193/211 (91.47%), Postives = 196/211 (92.89%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG+MSTKEVDEQMINV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.465e-109
Identity = 192/211 (91.00%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.465e-109
Identity = 193/211 (91.47%), Postives = 196/211 (92.89%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTA AMFRGKMSTKEVDEQMINV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTACAMFRGKMSTKEVDEQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 395.201 bits (1014), Expect = 1.465e-109
Identity = 193/211 (91.47%), Postives = 196/211 (92.89%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWDAKNMMC+ADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  125 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCSADPRHGRYLTASAMFRGKMSTKEVDEQMINV 335
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.465e-109
Identity = 192/211 (91.00%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.465e-109
Identity = 192/211 (91.00%), Postives = 197/211 (93.36%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR+LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 2.499e-109
Identity = 193/211 (91.47%), Postives = 196/211 (92.89%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY SLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NV
Sbjct:  125 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNV 335
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 2.499e-109
Identity = 193/211 (91.47%), Postives = 195/211 (92.42%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ YR LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQMYRPLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 4.263e-109
Identity = 193/211 (91.47%), Postives = 195/211 (92.42%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISK+REEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIP PRLHFFMVGFAPLTSRGSQQY SLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  126 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 336
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 4.263e-109
Identity = 193/211 (91.47%), Postives = 195/211 (92.42%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISK+REEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIP PRLHFFMVGFAPLTSRGSQQY SLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  126 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 336
The following BLAST results are available for this feature:
BLAST of CF417095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB8_ORYSJ1.465e-10991.47Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB7_MAIZE1.465e-10991.00Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB5_GOSHI1.465e-10991.47Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB4_MAIZE1.465e-10991.47Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB3_WHEAT1.465e-10991.00Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB1_ELEIN1.465e-10991.00Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P... [more]
TBB6_GOSHI2.499e-10991.47Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB1_WHEAT2.499e-10991.47Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB2_SOLTU4.263e-10991.47Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU4.263e-10991.47Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-025 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417095 ID=CF417095; Name=CF417095; organism=Citrus sinensis; type=EST; length=635bp
AGAAGCCGAGAACTGCGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTC
TGGGAGGAGGGACGGGTTCCGGGATGGGAACTTTGTTGATATCAAAGATA
AGAGAGGAATACCCGGATAGAATGATGCTTACTTTCTCAGTTTTCCCATC
TCCTAAGGTCTCTGATACTGTTGTTGAGCCTTACAATGCTACTCTCTCTG
TACATCAGCTAGTTGAAAATGCAGATGAGTGTATGGTTCTTGATAATGAA
GCCCTTTATGACATCTGTTTCCGCACTCTCAAACTCAGCACTCCAAGCTT
TGGTGATCTGAATCATTTGATATCTGCTACAATGTCTGGAGTTACCTGTT
GTTTGAGATTCCCTGGTCAATTAAACTCTGACCTTAGAAAGCTTGCTGTT
AATCTCATTCCTTTTCCTAGGCTTCACTTTTTCATGGTGGGATTTGCTCC
CTTGACATCCCGTGGCTCTCAGCAATATAGATCTTTGACTGTCCCGGAGC
TCACCCAGCAAATGTGGGATGCTAAGAATATGATGTGTGCAGCTGATCCT
CGCCATGGTCGTTACTTGACTGCCTCAGCCATGTTTAGGGGCAAAATGAG
CACTAAAGAAGTTGATGAGCAGATGATCAATGTGC
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