CF417095

Overview
NameCF417095
Unique NameCF417095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.650e-39
Identity = 74/210 (35.24%), Postives = 122/210 (58.10%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            A+ C  LQGF +                + ++  EY  +  L  +++P+P+ + +VVEPYN+ L+ H  +E++D C ++DNEA++DIC R L +S P++ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  ++P+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V   + NV
Sbjct:  126 ADQCTGLQGFLIFRSFGGGTGSGFASLLMERLSVEYGKKSKLEIAIYPAPQSATSVVEPYNSILTTHTTLEHSDCCFMVDNEAIFDICQRNLDVSRPTYTNLNRLIGQIVSSITASLRFEGALNVDLTEFQTNLVPYPRIHFPLTTYSPIISAEKAYHEQLSVGEITSACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVTASIANV 335          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.036e-38
Identity = 77/205 (37.56%), Postives = 115/205 (56.10%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDE 619
            AE C  LQGF +                + ++  EY  ++ L FSV+PSP++S  VVEPYNA L+ H  +E +D   ++DNEALYDIC   L +  PS+  +N LI+   S +T  LRF G LN DL +   NL+P+PR+HF +   AP+ S        L+V ++T   ++  N +   DPR G+Y+    ++RG +  K+V+E
Sbjct:  133 AEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSPRISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIGRPSYASINRLIAQVSSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNE 337          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.353e-38
Identity = 78/204 (38.24%), Postives = 117/204 (57.35%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVD 616
            A+ C  LQGF V H              + ++  EY  +  L FSV+P  +VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S VT  LRF G LN DL +   NL+P+PR+HF +  +A + S     +  L+VPE+T   ++  N M   DPR G+Y+    ++RG +  K+V+
Sbjct:    1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLNRLIGQIVSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVN 204          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.767e-38
Identity = 75/204 (36.76%), Postives = 114/204 (55.88%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVD 616
            AE C  LQGF +                + ++  EY  +  L FSV+P+P++S  VVEPYN+ L+ H   E+ D   ++DNEA+YDIC R L +  PS   +N L+   +S +T  LRF G LN DL +   NL+P+PR+HF M  FAP+ S     +   +V ++T   +++ N +   DPR G+Y+    ++RG +  KEV+
Sbjct:  133 AEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVYPAPRISTAVVEPYNSVLTTHSTTEHTDCTFMVDNEAVYDICHRKLGVECPSHASINRLVVQVVSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVN 336          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.767e-38
Identity = 74/203 (36.45%), Postives = 119/203 (58.62%), Query Frame = 2
Query:    8 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVD 616
            +NC+ LQGF V H              + ++  +Y  +  L FSV+P+P ++ +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC + L ++ P   +LN LI+  +S +T  LRF G LN DL +   NL+PFPR+HF +   AP+ S     + S +V E+T   ++  N M   DPR G+Y+  + ++RG +  K+ +
Sbjct:  126 DNCNGLQGFFVFHSFGGGTGSGFGALILERLSTDYGKKSKLEFSVYPAPTLASSVVEPYNSVLTTHTTLEHSDCSFMVDNEAIYDICKKNLNIAQPGLTNLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLATLAPIVSVDKAGHESNSVAEMTYSCFEPGNQMVKCDPRDGKYMACALLYRGDVVPKDTN 328          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.308e-38
Identity = 73/202 (36.14%), Postives = 120/202 (59.41%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKE 610
            A++C  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PS+ +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +V ++P+ S     + + +V ++T   ++  N M   DPR+G+Y+    ++RG +  KE
Sbjct:  126 ADSCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPSYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISADKASHEANSVQDITMSCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKE 327          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.496e-37
Identity = 73/210 (34.76%), Postives = 121/210 (57.62%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            A+NC   QG  V H              + ++  +Y  +  L F V+P+P++S +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC + L ++ P F +LN LI+  +S +T  LRF G LN DL +   NL+PFPR+HF +  +APL S   +Q+   +V E+T   +++ N M   D + G+Y+    ++RG +  K+    + ++
Sbjct:  124 ADNCSGRQGLFVFHSFGGGTGSGFGALLLERLSTDYGKKAKLEFCVYPAPQLSSSVVEPYNSLLTTHTTLEHSDCSFMVDNEAIYDICKKNLGVAQPGFTNLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASI 333          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.954e-37
Identity = 73/196 (37.24%), Postives = 114/196 (58.16%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG 592
            A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPY+  L+ +  +E AD   ++DNEA+YDIC R L L  P++ +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     + + +V E+T   ++  N M   DPRHG+Y+    ++ G
Sbjct:  126 ADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYHNFLTTNTTLEQADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYGG 321          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.654e-36
Identity = 77/210 (36.67%), Postives = 118/210 (56.19%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            A+ C  LQGF V +              + ++  +Y  +  L F+V+PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  P++ +LN LI+  +S +T  LRF G LN D+ +   NL+P+P      V   P T      +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  +
Sbjct:  126 ADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYP-----SVIIRPSTPAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATI 330          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.321e-35
Identity = 74/204 (36.27%), Postives = 120/204 (58.82%), Query Frame = 2
Query:    8 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVD 616
            ENC  LQGF + +                K+ ++Y  +  L   ++PSPK+S  VVEPYNA L+ H +++  +   ++DNE++Y IC + L + +PS+  LN LI+  MS +T  LRF G LN DL +   NL+PFPR HF M+ +AP+ +      ++L+V ELT  ++D  ++M   D    G++++   M+RG +S++EV+
Sbjct:  132 ENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMVDNESIYKICQKQLGVHSPSYFHLNQLIAQAMSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVN 335          
The following BLAST results are available for this feature:
BLAST of CF417095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA2_HOMAM4.650e-3935.24Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBAL3_MOUSE1.036e-3837.56Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA3_CHICK1.353e-3838.24Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBAL3_HUMAN1.767e-3836.76Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBAA_SCHCO1.767e-3836.45Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA1_EMENI2.308e-3836.14Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBAB_SCHCO1.496e-3734.76Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA_SORMA1.954e-3737.24Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA1_STYLE1.654e-3636.67Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA1_ENTHI5.321e-3536.27Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-025 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417095 ID=CF417095; Name=CF417095; organism=Citrus sinensis; type=EST; length=635bp
AGAAGCCGAGAACTGCGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTC
TGGGAGGAGGGACGGGTTCCGGGATGGGAACTTTGTTGATATCAAAGATA
AGAGAGGAATACCCGGATAGAATGATGCTTACTTTCTCAGTTTTCCCATC
TCCTAAGGTCTCTGATACTGTTGTTGAGCCTTACAATGCTACTCTCTCTG
TACATCAGCTAGTTGAAAATGCAGATGAGTGTATGGTTCTTGATAATGAA
GCCCTTTATGACATCTGTTTCCGCACTCTCAAACTCAGCACTCCAAGCTT
TGGTGATCTGAATCATTTGATATCTGCTACAATGTCTGGAGTTACCTGTT
GTTTGAGATTCCCTGGTCAATTAAACTCTGACCTTAGAAAGCTTGCTGTT
AATCTCATTCCTTTTCCTAGGCTTCACTTTTTCATGGTGGGATTTGCTCC
CTTGACATCCCGTGGCTCTCAGCAATATAGATCTTTGACTGTCCCGGAGC
TCACCCAGCAAATGTGGGATGCTAAGAATATGATGTGTGCAGCTGATCCT
CGCCATGGTCGTTACTTGACTGCCTCAGCCATGTTTAGGGGCAAAATGAG
CACTAAAGAAGTTGATGAGCAGATGATCAATGTGC
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