CF417095 | Citrus Genome Database

Overview


Name	CF417095
Unique Name	CF417095
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	635

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 72/204 (35.29%), Postives = 117/204 (57.35%), Query Frame = 2

Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC-CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEV 613
            A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PS+ + N L++   S +T   L F   LN DL +   NL+P+PR+HF +  ++P+ S G   + S +V E+T   ++  N M   DPR+G+Y+    ++RG +  K+V
Sbjct:  126 ADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNLGIERPSYENSNRLMAQGQSPITAIMLLFDCALNVDLNEFQTNLVPYPRIHFPLASYSPVVSAGKASHESNSVMEVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDV 329

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 72/180 (40.00%), Postives = 108/180 (60.00%), Query Frame = 2

Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRSLTVPELTQQMWDAKNMM 535
            EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG2_BOVIN (Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 72/180 (40.00%), Postives = 108/180 (60.00%), Query Frame = 2

Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRSLTVPELTQQMWDAKNMM 535
            EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_HUMAN (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 72/180 (40.00%), Postives = 108/180 (60.00%), Query Frame = 2

Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRSLTVPELTQQMWDAKNMM 535
            EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_BOVIN (Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 72/180 (40.00%), Postives = 108/180 (60.00%), Query Frame = 2

Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRSLTVPELTQQMWDAKNMM 535
            EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.506e-32
Identity = 72/180 (40.00%), Postives = 107/180 (59.44%), Query Frame = 2

Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP-SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRSLTVPELTQQMWDAKNMM 535
            EA+  D L+GF +CH              + ++ + YP +++ T+SVFP   ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.191e-32
Identity = 72/180 (40.00%), Postives = 108/180 (60.00%), Query Frame = 2

Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRSLTVPELTQQMWDAKNMM 535
            EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.191e-32
Identity = 72/180 (40.00%), Postives = 108/180 (60.00%), Query Frame = 2

Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRSLTVPELTQQMWDAKNMM 535
            EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.227e-31
Identity = 76/215 (35.35%), Postives = 118/215 (54.88%), Query Frame = 2

Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L LS P+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R     R  TV ++ +++   KN+M ++  R       +Y++   + +G++   +V E +
Sbjct:   77 EADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESL 291

[Close]

BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.227e-31
Identity = 76/215 (35.35%), Postives = 118/215 (54.88%), Query Frame = 2

Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L LS P+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R     R  TV ++ +++   KN+M ++  R       +Y++   + +G++   +V E +
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNVMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESL 339

The following BLAST results are available for this feature:

BLAST of CF417095 vs. ExPASy Swiss-Prot

BLAST of CF417095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419


Match Name	E-value	Identity	Description
TBA_AJECA	2.022e-34	35.29	Tubulin alpha chain (Fragment) OS=Ajellomyces caps...	[more]
TBG2_MOUSE	4.216e-32	40.00	Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=...	[more]
TBG2_BOVIN	4.216e-32	40.00	Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 ...	[more]
TBG1_HUMAN	4.216e-32	40.00	Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=...	[more]
TBG1_BOVIN	4.216e-32	40.00	Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 ...	[more]
TBG2_HUMAN	5.506e-32	40.00	Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=...	[more]
TBG1_RAT	7.191e-32	40.00	Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg...	[more]
TBG1_MOUSE	7.191e-32	40.00	Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=...	[more]
TBG3_MAIZE	1.227e-31	35.35	Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU...	[more]
TBG2_MAIZE	1.227e-31	35.35	Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-025 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C5 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417095 ID=CF417095; Name=CF417095; organism=Citrus sinensis; type=EST; length=635bp
AGAAGCCGAGAACTGCGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTC
TGGGAGGAGGGACGGGTTCCGGGATGGGAACTTTGTTGATATCAAAGATA
AGAGAGGAATACCCGGATAGAATGATGCTTACTTTCTCAGTTTTCCCATC
TCCTAAGGTCTCTGATACTGTTGTTGAGCCTTACAATGCTACTCTCTCTG
TACATCAGCTAGTTGAAAATGCAGATGAGTGTATGGTTCTTGATAATGAA
GCCCTTTATGACATCTGTTTCCGCACTCTCAAACTCAGCACTCCAAGCTT
TGGTGATCTGAATCATTTGATATCTGCTACAATGTCTGGAGTTACCTGTT
GTTTGAGATTCCCTGGTCAATTAAACTCTGACCTTAGAAAGCTTGCTGTT
AATCTCATTCCTTTTCCTAGGCTTCACTTTTTCATGGTGGGATTTGCTCC
CTTGACATCCCGTGGCTCTCAGCAATATAGATCTTTGACTGTCCCGGAGC
TCACCCAGCAAATGTGGGATGCTAAGAATATGATGTGTGCAGCTGATCCT
CGCCATGGTCGTTACTTGACTGCCTCAGCCATGTTTAGGGGCAAAATGAG
CACTAAAGAAGTTGATGAGCAGATGATCAATGTGC