CF417095

Overview
NameCF417095
Unique NameCF417095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.227e-31
Identity = 76/215 (35.35%), Postives = 118/215 (54.88%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L LS P+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R     R  TV ++ +++   KN+M ++  R       +Y++   + +G++   +V E +
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESL 339          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.602e-31
Identity = 75/215 (34.88%), Postives = 120/215 (55.81%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPRH-----GRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L+ P+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++   KN+M ++  R+      +Y++   + +G++   +V E +
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESL 339          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.602e-31
Identity = 71/180 (39.44%), Postives = 107/180 (59.44%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRSLTVPELTQQMWDAKNMM 535
            EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN  L  I    L +  PSF  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 75/215 (34.88%), Postives = 119/215 (55.35%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPRH-----GRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L+ P+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R     R  TV ++ +++   KN+M ++  R+      +Y++   + +G++   +V E +
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESL 339          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 75/215 (34.88%), Postives = 120/215 (55.81%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPRH-----GRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L+ P+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++   KN+M ++  R+      +Y++   + +G++   +V E +
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESL 339          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 71/180 (39.44%), Postives = 107/180 (59.44%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRSLTVPELTQQMWDAKNMM 535
            EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++S  VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSHVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 77/218 (35.32%), Postives = 122/218 (55.96%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG---SQQ---YRSLTVPELTQQMWDAKNMMCAADP---RHGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF +CH              + ++ + YP +++ TFSVFP+  ++SD VV+PYN+ L++ +L   AD  +VLDN AL  I    L +  PSF  +N+L+S  MS  T  LR+P  +N++L  L   LIP P+LHF M G+ PLTS     +QQ    R  TV ++ +++   KNMM +  P    H  Y++   + +G++   +V + +
Sbjct:  125 EADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGPDKSNHHCYISILNIIQGEVDPTQVHKSL 342          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 74/215 (34.42%), Postives = 119/215 (55.35%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L +  P+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++  AKN+M ++  R       +Y++   + +G++   +V + +
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSL 339          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.038e-30
Identity = 70/210 (33.33%), Postives = 116/210 (55.24%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT--SRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF + H              + ++ + YP +++ T+SVFP+   +D VV+PYN  LS+ +L+ NAD  +VLDN AL  I    LKL  P+F  +N ++S  M+  T  LR+PG +N+DL  L  +L+P PR HF M G+ PL+   +     R  TV ++ +++   KN+M     + G Y++   + +G +   +V + +
Sbjct:  125 EADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPNE--NDVVVQPYNCLLSMKRLILNADCVVVLDNTALTSIAVDRLKLLQPTFPQINSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSL 332          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 72/217 (33.18%), Postives = 113/217 (52.07%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ---YRSLTVPELTQQMWDAKN---MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAE  D L+GF + H              + ++ + YP +++ T+SVFP     D VV+PYN+ LS+ +L  +AD  +VLDN AL  IC   L +   SF   N L+S  MS  T  LR+PG +N+DL  +  +LIP PR HF    + P TS   +Q    R  TV ++ +++   KN    M     RH  Y++   + +G++   +V + ++ +
Sbjct:  125 EAEGSDSLEGFMLLHSIAGGTGSGLGSYLLERMNDRYPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTPFTSDKIEQAKAVRKTTVLDVMRRLLQPKNRLVSMPTTPSRHACYISILNIIQGEVDPTDVHKSLLRI 341          
The following BLAST results are available for this feature:
BLAST of CF417095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBG1_MAIZE1.227e-3135.35Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBG2_ARATH1.602e-3134.88Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG1_CANFA1.602e-3139.44Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBG2_ORYSJ2.092e-3134.88Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG1_ARATH2.092e-3134.88Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG1_XENLA2.733e-3139.44Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 P... [more]
TBG1_DROME2.733e-3135.32Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG_PHYPA6.088e-3134.42Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBG1_EUPCR1.038e-3033.33Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_USTVI1.356e-3033.18Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-025 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417095 ID=CF417095; Name=CF417095; organism=Citrus sinensis; type=EST; length=635bp
AGAAGCCGAGAACTGCGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTC
TGGGAGGAGGGACGGGTTCCGGGATGGGAACTTTGTTGATATCAAAGATA
AGAGAGGAATACCCGGATAGAATGATGCTTACTTTCTCAGTTTTCCCATC
TCCTAAGGTCTCTGATACTGTTGTTGAGCCTTACAATGCTACTCTCTCTG
TACATCAGCTAGTTGAAAATGCAGATGAGTGTATGGTTCTTGATAATGAA
GCCCTTTATGACATCTGTTTCCGCACTCTCAAACTCAGCACTCCAAGCTT
TGGTGATCTGAATCATTTGATATCTGCTACAATGTCTGGAGTTACCTGTT
GTTTGAGATTCCCTGGTCAATTAAACTCTGACCTTAGAAAGCTTGCTGTT
AATCTCATTCCTTTTCCTAGGCTTCACTTTTTCATGGTGGGATTTGCTCC
CTTGACATCCCGTGGCTCTCAGCAATATAGATCTTTGACTGTCCCGGAGC
TCACCCAGCAAATGTGGGATGCTAAGAATATGATGTGTGCAGCTGATCCT
CGCCATGGTCGTTACTTGACTGCCTCAGCCATGTTTAGGGGCAAAATGAG
CACTAAAGAAGTTGATGAGCAGATGATCAATGTGC
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