CF417095

Overview
NameCF417095
Unique NameCF417095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 70/215 (32.56%), Postives = 119/215 (55.35%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRSLTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAE  D L+GF V H              + ++ +++P +++ T+SVFP+ +  D VV+PYN+ L++ +LV +AD  +VLDN AL  I    L + TPSF   N L+S  ++  T  LR+PG +N+DL  +  +LIP PR HF M  + P TS     ++  R  TV ++ +++   KN M    P +   Y++   + +G++   +V + ++ +
Sbjct:  125 EAEGSDSLEGFMVMHSIAGGTGSGLGSFLLERLNDKFPKKLIQTYSVFPNAQEGDVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAASTQTLRYPGYMNNDLVGIIASLIPTPRCHFLMTSYTPFTSDQIDKAKTIRRTTVLDVMRRLLQPKNRMVLTTPSKTACYISILNIIQGEVDPTDVHQSLLRI 339          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 68/209 (32.54%), Postives = 114/209 (54.55%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF + H              + ++ + YP +++ T+SVFP    +D VV+PYN  LS+ +L  NAD  +VLDN AL  I    LK+  P+F  +N ++S  M+  T  LR+PG +N+D+  L  +L+P PR HF M G+ PL+  +     R  TV ++ +++   KN+M     + G Y++   + +G +   +V + +
Sbjct:  125 EADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQKFNSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSL 331          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 68/209 (32.54%), Postives = 114/209 (54.55%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF + H              + ++ + YP +++ T+SVFP    +D VV+PYN  LS+ +L  NAD  +VLDN AL  I    LK+  P+F  +N ++S  M+  T  LR+PG +N+D+  L  +L+P PR HF M G+ PL+  +     R  TV ++ +++   KN+M     + G Y++   + +G +   +V + +
Sbjct:  125 EADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQKFTSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSL 331          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 70/211 (33.18%), Postives = 115/211 (54.50%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY---RSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF + H              + +I + YP +++ T+SVFP    +D VV+PYN  LS+ +L  NAD  +VLDN AL  I    LK+  P+F  +N ++S  M+  T  LR+PG +N+D+  L  +L+P PR HF M G+ PL+    Q+Y   R  T  ++ +++   KN+M     + G Y++   + +G +   +V + +
Sbjct:  125 EADGSDSLEGFVLTHSIAGGTGSGFGSYLLERINDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSL--DQKYTSVRKTTFLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSL 331          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 73/219 (33.33%), Postives = 118/219 (53.88%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-----SQQYRSLTVPELTQQMWDAKNMMCAA-----DPRHGRYLTASAMFRGKMSTKEVDEQM 625
            EAE CD L+GF +CH              +  I + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  +AD  +VLDN AL  I    L L  P    +N LI+  M+  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT+       +   R  TV ++ +++   KN+M +      D  + +Y++   + +G++   +V + +
Sbjct:  125 EAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQSESSDVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERLHLHKPDVQQINSLIATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKSRDIANAKYISILNIIQGEVDPSQVHKSL 343          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 69/210 (32.86%), Postives = 116/210 (55.24%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ--QYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF + H              + K+ + YP +++ T+SVFP+   +D VV+PYN  LS+ +LV NAD  +VLDN A+  I    LKL  P+   +N ++S  M+  T  LR+PG +N+DL  L  +L+P PR HF M G+ PL+    +    R  TV ++ +++   +N+M +   + G Y++   + +G +   +V + +
Sbjct:  125 EADGSDSLEGFVLTHSIAGGTGSGFGSYLLEKLNDHYPKKLVQTYSVFPND--NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLNDQKVSSIRKTTVLDVMRRLLQTRNIMTSGAIKKGAYMSILNIIQGDVDPTQVHKSL 332          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 69/216 (31.94%), Postives = 120/216 (55.56%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSL---TVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAE  D L+GF + H              + ++ + +P +++ T+SVFP+ + VSD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L +  P+F   N L+S  MS  T  LR+PG +N+DL  +  +LIP PR HF    + P TS+  +  R++   TV ++ +++   KN M + +P +   +++   + +G+    +V + ++ +
Sbjct:  125 EAEGSDSLEGFSLLHSIAGGTGSGLGSYLLERLNDRFPKKIVQTYSVFPNNRSVSDVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMRRLLQPKNRMVSVNPGKQSCFISILNIIQGEADPNDVHKSLLRI 340          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 69/184 (37.50%), Postives = 108/184 (58.70%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS--RGSQQYRSLTVPELTQQMWDAKNMMCAA 544
            EA+  D L+GF +CH              + ++ E +P +++ T+SVFP+  ++SD VV+PYN+ L++ +L + AD  +VLDN AL  I    L + TP+F  +N+L+S  MS  T  LR+P  +N++L  L  +LIP P+LHF M G+ PL S        R  TV ++ +++   KNMM +A
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSA 308          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 74/216 (34.26%), Postives = 120/216 (55.56%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQ-LVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQM 625
            EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++++ L  NAD  +VLDN AL  I    L +  P+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++  AKN+M ++  R       +Y++   + +G++   +V + +
Sbjct:  125 EADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSL 340          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.558e-29
Identity = 69/216 (31.94%), Postives = 118/216 (54.63%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP-SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ---YRSLTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EA+  D L+GF + H              + ++ + YP +++ T+SVFP S  VSD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L    P+F   N L+S  MS  T  LR+PG +N+DL  +  +LIP PR HF +  + P T++  ++    R  TV ++ +++   KN M + +P +   +++   + +G+    +V + ++ +
Sbjct:  125 EADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340          
The following BLAST results are available for this feature:
BLAST of CF417095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBG_COPC71.771e-3032.56Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG1_EUPOC2.313e-3032.54Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG2_EUPOC3.021e-3032.54Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG_EUPAE5.153e-3033.18Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG_CHLRE5.153e-3033.33Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG2_EUPCR5.153e-3032.86Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_SCHJP6.731e-3031.94Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG2_DROME6.731e-3037.50Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG_ANEPH8.790e-3034.26Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBG_SCHPO2.558e-2931.94Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-025 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417095 ID=CF417095; Name=CF417095; organism=Citrus sinensis; type=EST; length=635bp
AGAAGCCGAGAACTGCGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTC
TGGGAGGAGGGACGGGTTCCGGGATGGGAACTTTGTTGATATCAAAGATA
AGAGAGGAATACCCGGATAGAATGATGCTTACTTTCTCAGTTTTCCCATC
TCCTAAGGTCTCTGATACTGTTGTTGAGCCTTACAATGCTACTCTCTCTG
TACATCAGCTAGTTGAAAATGCAGATGAGTGTATGGTTCTTGATAATGAA
GCCCTTTATGACATCTGTTTCCGCACTCTCAAACTCAGCACTCCAAGCTT
TGGTGATCTGAATCATTTGATATCTGCTACAATGTCTGGAGTTACCTGTT
GTTTGAGATTCCCTGGTCAATTAAACTCTGACCTTAGAAAGCTTGCTGTT
AATCTCATTCCTTTTCCTAGGCTTCACTTTTTCATGGTGGGATTTGCTCC
CTTGACATCCCGTGGCTCTCAGCAATATAGATCTTTGACTGTCCCGGAGC
TCACCCAGCAAATGTGGGATGCTAAGAATATGATGTGTGCAGCTGATCCT
CGCCATGGTCGTTACTTGACTGCCTCAGCCATGTTTAGGGGCAAAATGAG
CACTAAAGAAGTTGATGAGCAGATGATCAATGTGC
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