CF417095

Overview
NameCF417095
Unique NameCF417095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig433 contig Csv1_Contig433:1..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22
Identity = 62/229 (27.07%), Postives = 111/229 (48.47%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR------------TLK---LSTPSFGDL-----------NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEV 613
            AE+CDCLQ F + H              +  + +E+P+      S++PS +  D +  PYN+ L++ +L E+AD  + +DN++L+DI  +            T+K   L T S G L           N++++  +  +T   RF G LN DL ++++NL+PFP+LH+ +    PL +          + ++    +   + +  ADP+H  YL  + M RG +   ++
Sbjct:  132 AEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGE-DDVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDL 359          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22
Identity = 52/151 (34.44%), Postives = 88/151 (58.28%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAP 451
            EAE CD L+ F + H              + +I+EE+P +++ T+S+FP+  + SD VV+PYN+ L++H+L+EN+D  +V+DN +L      +L++ TP+F  +N LIS  M+  T  +RFPG +    + +   L+P   L F +  + P
Sbjct:  118 EAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTP 268          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22
Identity = 48/124 (38.71%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  263 ICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            IC R L +  PS+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  +
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 124          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 57/229 (24.89%), Postives = 105/229 (45.85%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR--------------------------TLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEV 613
            AE CDCLQ F + H              +  + +E+P+      +V+PS +  D +  PYN+ L++ +L E+AD  + +DN++L+DI  +                            K     F  +N++++  +  +T   RF G LN DL ++++NL+PFP+LH+ +    PL +          + ++    +   + +  ADPRH  YL  + + RG +   ++
Sbjct:  132 AEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDL 359          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 2
Query:    5 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLI-------PFPRLH 427
            A+ C  LQGF V H              +  +   Y  +  L FS++P+P+VS  +V+PYN+ L+ H  +E++D   ++DN+A+YDIC   L +  P++ +LN LIS  +S +T  LRF G LN DL +   NL+       P+P +H
Sbjct:   65 ADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSYLTSTSPWPPMH 212          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.811e-22
Identity = 58/181 (32.04%), Postives = 91/181 (50.28%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR---GSQQYRSLTVPELTQQMWDAKNMM 535
            E ++ D  +GFQ+ H              +  + + Y    + T+SVFPS K S+ VV PYN  L++ +L E+AD  ++ DN AL ++  RT +    S+   N LIS+ +S +T  LRFP  + + +  +   LIP P LHF    F P T     G Q+Y+  T  ++   + D  N +
Sbjct:  127 ELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPS-KQSEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTPFTPDYIIGGQRYKKNTAYDVLLDLLDPFNSL 306          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 59/185 (31.89%), Postives = 92/185 (49.73%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPR 553
            EAEN + L G    H              + ++RE +P +++ T+SVF +   S D VV PYN  LS+ +L+EN D  +VLDN AL+ +     K  TP+F  +N L++  MS  T   RF   +   +R L  +L PFP +HF     +P+        R  +V ++T+ +    +MM +   R
Sbjct:  127 EAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIRYL--DLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMMVSTASR 309          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 49/153 (32.03%), Postives = 80/153 (52.29%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS 460
            E ++ D  +GFQ+ H              +  + + YP +++ T+SVFP+ + S+ VV+ YN  L++ +L+E++D  +V DN +L +I  +  +         N LIS  +S VT  +RFP  + S +  +   LIP P LHF    F P TS
Sbjct:  126 EIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTS 277          
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.177e-14
Identity = 52/163 (31.90%), Postives = 79/163 (48.47%), Query Frame = 2
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALY---DICFRTLKLSTPSFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 463
            E + CD L  FQ+ H              +  I + Y  + +L TFS+FPS +  SD VV+PYN  L++ +L++ +D   V  N++L    +I F           DL    N LI+   + V+  LRFPG + S +  +  NLIP P L F     AP +++
Sbjct:  152 EVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFSTQ 314          
The following BLAST results are available for this feature:
BLAST of CF417095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBE_HUMAN1.775e-2227.07Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBG_ENCCU3.028e-2234.44Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBA_OCTVU3.028e-2238.71Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBE_MOUSE5.165e-2224.89Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBA4B_HUMAN5.165e-2235.81Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBG_CANGA8.811e-2232.04Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBG_CAEEL1.272e-2031.89Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_YEAST9.118e-1932.03Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_CANAL5.177e-1431.90Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-025 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417095 ID=CF417095; Name=CF417095; organism=Citrus sinensis; type=EST; length=635bp
AGAAGCCGAGAACTGCGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTC
TGGGAGGAGGGACGGGTTCCGGGATGGGAACTTTGTTGATATCAAAGATA
AGAGAGGAATACCCGGATAGAATGATGCTTACTTTCTCAGTTTTCCCATC
TCCTAAGGTCTCTGATACTGTTGTTGAGCCTTACAATGCTACTCTCTCTG
TACATCAGCTAGTTGAAAATGCAGATGAGTGTATGGTTCTTGATAATGAA
GCCCTTTATGACATCTGTTTCCGCACTCTCAAACTCAGCACTCCAAGCTT
TGGTGATCTGAATCATTTGATATCTGCTACAATGTCTGGAGTTACCTGTT
GTTTGAGATTCCCTGGTCAATTAAACTCTGACCTTAGAAAGCTTGCTGTT
AATCTCATTCCTTTTCCTAGGCTTCACTTTTTCATGGTGGGATTTGCTCC
CTTGACATCCCGTGGCTCTCAGCAATATAGATCTTTGACTGTCCCGGAGC
TCACCCAGCAAATGTGGGATGCTAAGAATATGATGTGTGCAGCTGATCCT
CGCCATGGTCGTTACTTGACTGCCTCAGCCATGTTTAGGGGCAAAATGAG
CACTAAAGAAGTTGATGAGCAGATGATCAATGTGC
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