CF417095

Overview
NameCF417095
Unique NameCF417095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig433 contig Csv1_Contig433:1..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.980e-106
Identity = 190/211 (90.05%), Postives = 192/211 (91.00%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVF SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI  RTLKL TP+FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY SLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFASPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIXLRTLKLVTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYXSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.586e-106
Identity = 185/211 (87.68%), Postives = 194/211 (91.94%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISA MSG+TCCLRFPGQLN+DLRKLAVNLIPFPRLHFFMVGF PLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NV
Sbjct:  123 EAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.586e-106
Identity = 185/211 (87.68%), Postives = 194/211 (91.94%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISA MSG+TCCLRFPGQLN+DLRKLAVNLIPFPRLHFFMVGF PLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NV
Sbjct:  123 EAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.586e-106
Identity = 185/211 (87.68%), Postives = 194/211 (91.94%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISA MSG+TCCLRFPGQLN+DLRKLAVNLIPFPRLHFFMVGF PLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NV
Sbjct:  123 EAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.586e-106
Identity = 185/211 (87.68%), Postives = 194/211 (91.94%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISA MSG+TCCLRFPGQLN+DLRKLAVNLIPFPRLHFFMVGF PLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NV
Sbjct:  123 EAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 5.761e-106
Identity = 186/211 (88.15%), Postives = 192/211 (91.00%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENCDCLQGFQ+CH              ISKIREEYPDRMMLTFSVF  P+ SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ PSFGDLNHLIS TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLT+PELTQQMWDA+NMMCAADPRHGRYLTASAMFRGKMSTKEVD+QMINV
Sbjct:  123 EAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFAVPEGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDQQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 382.489 bits (981), Expect = 9.827e-106
Identity = 185/211 (87.68%), Postives = 194/211 (91.94%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAEN DCLQGFQVCH              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ P+FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +L+VPELTQQMWDAKNMMCAADPRHGRYLTASA+FRGK+STKEVDEQM+N+
Sbjct:  123 EAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNI 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 2.420e-104
Identity = 183/211 (86.73%), Postives = 189/211 (89.57%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAENC CLQGFQ+CH              ISKI+EEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEN DECMVLDNEALYDICFRTLKL+ PSFGDLN LIS TMSG TCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS  SQQYR+LT+PELTQQMWDA+NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV
Sbjct:  123 EAENCACLQGFQICHSLGGGTGSGMGTLLISKIKEEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENGDECMVLDNEALYDICFRTLKLTNPSFGDLNRLISTTMSGATCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSSSSQQYRALTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB_TETTH (Tubulin beta chain OS=Tetrahymena thermophila GN=BTU1 PE=1 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.735e-102
Identity = 178/211 (84.36%), Postives = 192/211 (91.00%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRTLKL+TP++GDLNHL+SA MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQYR+LTVPELTQQM+DAKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NV
Sbjct:  123 EAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNV 333
[Close]
BLAST of CF417095 vs. ExPASy Swiss-Prot
Match: TBB1_PARTE (Tubulin beta chain OS=Paramecium tetraurelia GN=bPT2 PE=3 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.735e-102
Identity = 178/211 (84.36%), Postives = 192/211 (91.00%), Query Frame = 2 
Query:    2 EAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINV 634
            EAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRTLKL+TP++GDLNHL+SA MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQYR+LTVPELTQQM+DAKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NV
Sbjct:  123 EAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNV 333
The following BLAST results are available for this feature:
BLAST of CF417095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB1_ANEPH1.980e-10690.05Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB_POLAG2.586e-10687.68Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB_CHLRE2.586e-10687.68Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB_CHLIN2.586e-10687.68Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB1_VOLCA2.586e-10687.68Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB1_SOYBN5.761e-10688.15Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB4_ARATH9.827e-10687.68Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB7_GOSHI2.420e-10486.73Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB_TETTH1.735e-10284.36Tubulin beta chain OS=Tetrahymena thermophila GN=B... [more]
TBB1_PARTE1.735e-10284.36Tubulin beta chain OS=Paramecium tetraurelia GN=bP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-025 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417095 ID=CF417095; Name=CF417095; organism=Citrus sinensis; type=EST; length=635bp
AGAAGCCGAGAACTGCGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTC
TGGGAGGAGGGACGGGTTCCGGGATGGGAACTTTGTTGATATCAAAGATA
AGAGAGGAATACCCGGATAGAATGATGCTTACTTTCTCAGTTTTCCCATC
TCCTAAGGTCTCTGATACTGTTGTTGAGCCTTACAATGCTACTCTCTCTG
TACATCAGCTAGTTGAAAATGCAGATGAGTGTATGGTTCTTGATAATGAA
GCCCTTTATGACATCTGTTTCCGCACTCTCAAACTCAGCACTCCAAGCTT
TGGTGATCTGAATCATTTGATATCTGCTACAATGTCTGGAGTTACCTGTT
GTTTGAGATTCCCTGGTCAATTAAACTCTGACCTTAGAAAGCTTGCTGTT
AATCTCATTCCTTTTCCTAGGCTTCACTTTTTCATGGTGGGATTTGCTCC
CTTGACATCCCGTGGCTCTCAGCAATATAGATCTTTGACTGTCCCGGAGC
TCACCCAGCAAATGTGGGATGCTAAGAATATGATGTGTGCAGCTGATCCT
CGCCATGGTCGTTACTTGACTGCCTCAGCCATGTTTAGGGGCAAAATGAG
CACTAAAGAAGTTGATGAGCAGATGATCAATGTGC
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