CF417153

Overview
NameCF417153
Unique NameCF417153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.991e-23
Identity = 41/113 (36.28%), Postives = 56/113 (49.56%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR G+NILV+ + Y   G P  TN RH AAK+       A+E   W+      T       P GW      +              K + RD++++HY+ACLY+GINISG
Sbjct:   81 KDPFRGGDNILVLAETYNSDGTPNRTNFRHHAAKVMEQ----AKEDVPWFGLEQEYTLFDADGSPYGWPKG--GFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYSGINISG 187          

HSP 2 Score: 56.6102 bits (135), Expect = 9.991e-23
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  175 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            DKI AEY+W+ G G  +RSK  T+   V+D   L  W++DGSST QAPG D
Sbjct:   20 DKIQAEYVWVDGDG-GLRSKTTTVSKKVTDIGSLRIWDFDGSSTNQAPGHD 69          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 57/113 (50.44%), Postives = 68/113 (60.18%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            RDPFRRG +ILV+CDAY+P G  IP+NKR AAAKIF+   V  EE W        L  ++ +  PLGW      +              K WGRDIVD+HYKACLY+GINISG
Sbjct:   80 RDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVSDEETWYGLEQEYTLL-QKDVKWPLGWPIG--GYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISG 189          

HSP 2 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVML----TLLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            T+K+IAEYIWIGGSGMDMRSKAR+L GPVS   +LPKWNYDGSSTGQA G D        + F+        I ++C       T +  N+      +   +  +    W     YG+EQEYTLL
Sbjct:   17 TEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVSDEETW-----YGLEQEYTLL 136          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.926e-20
Identity = 43/113 (38.05%), Postives = 52/113 (46.02%), Query Frame = 3
Query:  366 DPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAE-EPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            DPFR   NI+V+ + +   G P   N RH   K+    D  AE EPW        L G    N P GW      + +            K   RDIV++HYKACLYAGI ISG
Sbjct:   86 DPFRGSPNIIVLAECWNAGGTPNKFNFRHDCVKVM---DTYAEDEPWFGLEQEYTLLGPD--NRPYGWPTG--GFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISG 191          

HSP 2 Score: 57.7658 bits (138), Expect = 1.926e-20
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:  178 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            +I+AEY+W+  +G + RSK+RTLP        LP WN+DGSST QAPG++
Sbjct:   25 QIMAEYVWVDAAG-ETRSKSRTLPEKDYKAEDLPVWNFDGSSTNQAPGDN 73          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.467e-19
Identity = 36/112 (32.14%), Postives = 52/112 (46.43%), Query Frame = 3
Query:  366 DPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            DPF  G N LVMCD      +P  T+ R A A+I    ++    PW        +  R     PLGW      +              + +GR++V++HY+ACL+AG+NI G
Sbjct:   91 DPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMH--EIRDTRPWFGMEQEYLIVDRD--EHPLGWPKH--GFPDPQGKYYCSVGADRAFGREVVETHYRACLHAGLNIFG 196          

HSP 2 Score: 57.3806 bits (137), Expect = 3.467e-19
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1
Query:  178 KIIAEYIWIGGSGMDMRSKART---LPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            KI A Y+WI G+G ++RSK RT   LP  + D    P WNYDGSSTGQA G D
Sbjct:   29 KIQATYVWIDGTGENLRSKTRTFDKLPKRIED---YPIWNYDGSSTGQAKGRD 78          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.470e-19
Identity = 43/114 (37.72%), Postives = 55/114 (48.25%), Query Frame = 3
Query:  363 RDPFRRG-NNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            R PFRR  N ++V+CD Y   G P+ TN RH A  IF       E+PW       +   R+  N P+G     + +AS              +GR I D H +ACLYAGI ISG
Sbjct:   81 RCPFRRNVNGVIVICDTYDVNGVPLETNHRHNANIIFEKYQ--NEKPWYGL-EQEYFIFRKDTNQPIG-----MEYASKQGQYYCSVGSQNAYGRRISDEHMEACLYAGIKISG 186          

HSP 2 Score: 51.6026 bits (122), Expect = 3.470e-19
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  184 IAEYIWIGGSGMDMRSKARTLPGPVSDPSKL---PKWNYDGSSTGQAPG 321
            I EY+WIGG+G ++RSK R L   +    KL   P WNYDGSST QA G
Sbjct:   20 IIEYVWIGGNG-ELRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANG 67          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.513e-19
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  181 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            I+AEY+W+   G   RSK+RTLP     P  LP WN+DGSST QAPG++
Sbjct:   24 IMAEYVWVDADG-GTRSKSRTLPEKEYKPEDLPVWNFDGSSTNQAPGDN 71          

HSP 2 Score: 55.8398 bits (133), Expect = 4.513e-19
Identity = 40/113 (35.40%), Postives = 53/113 (46.90%), Query Frame = 3
Query:  366 DPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            DPFR   NI+V+ + +   G P   N RH   K+  +++D   +EP         L G    N P GW      + +            K   RDIV++HYKACLYAGI ISG
Sbjct:   84 DPFRGSPNIIVLAECWNADGTPNKYNFRHDCVKVMDTYAD---DEPLFGLEQEYTLLGSD--NRPYGWPAG--GFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISG 189          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 56/127 (44.09%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  178 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRENQFQQTKDMQLP-----RFS-AILMLWLKNH--GYGIEQEYTLL 534
            KI AEY+WIGGS  D+RSK+RTL    + P  LP WNYDGSSTGQAPG D     +  S F+    G   I ++C      + N    T     P     RF+ A +M   K     +GIEQEYTLL
Sbjct:   37 KICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVNP-DGTLAAPKPIPTNTRFACAEVMEKAKKEEPWFGIEQEYTLL 162          

HSP 2 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 45/123 (36.59%), Postives = 58/123 (47.15%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTP----------AGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR G+NILVMCD Y P          A +PIPTN R A A++   +    EEPW        L    +   PLGW      + +               GRD+ + HY+ CL AG+NISG
Sbjct:   98 KDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVMEKAK--KEEPWFGIEQEYTLL-NAITKWPLGWPKG--GYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISG 215          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 3
Query:  366 DPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLS--WASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            DPFRRG+NILV+C+ +   G P   N RH  A++        EE W        L     L GP GW + W    +              K + RDIV++HY+ACLYAG+ ISG
Sbjct:   72 DPFRRGDNILVLCETWDSDGSPNKFNYRHDCARLMETH--AKEEFW------FGLEQEYTLLGPDGWPYGWPKGGFPGAQGPYYCGVGTGKVYCRDIVEAHYRACLYAGVKISG 177          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  366 DPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            DPFRRG+NI+V+ + +   G P   N RH  AK+ S      E+  +W+      T     + P+GW      + +            K + RD+V++HY+ACLY+GINISG
Sbjct:   75 DPFRRGDNIIVLAECWNNDGTPNKFNHRHECAKLMS----AHEKEVIWFGIEQEYTMFDESDNPVGWPKG--GFPAPQGPYYCGVGTGKVFARDVVEAHYRACLYSGINISG 180          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 44/113 (38.94%), Postives = 55/113 (48.67%), Query Frame = 3
Query:  366 DPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS-HSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            DPFRRG+NILV+   YT  G P   N R A AK+   H+D        W+      T     + P GW      +              + + RDIV++HYKACLYAGINISG
Sbjct:   88 DPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHADKET-----WFGIEQEYTMLDYYDRPFGWPKG--GFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISG 193          
The following BLAST results are available for this feature:
BLAST of CF417153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
GLNA_HEBCY9.991e-2336.28Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_PINSY8.143e-2250.44Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA_FUSSH1.926e-2038.05Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_CAEEL3.467e-1932.14Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_MIMIV3.470e-1937.72Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_GIBFU4.513e-1955.10Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA1_CHLRE4.785e-1444.09Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_EMENI2.626e-1237.72Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_YARLI7.639e-1234.82Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_SCHPO9.977e-1238.94Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-083 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_A4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417153 ID=CF417153; Name=CF417153; organism=Citrus sinensis; type=EST; length=701bp
ATAAAAGCCAGGCAACAACAGCCTCCTCCGTTCACGTCTCTGTGTAGCAC
ATTAACATCCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTGTTGTG
TTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCTT
AACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTACATATG
GATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCTTCCCG
GTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTCC
AGCACAGGCCAAGCACCTGGAGAAGATTAGTGAAGTGATCCTCTATCCTC
AAGCTATTTTCAAGGGATCCATTCAGGAGAGGCAACAATATTCTTGTTAT
GTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAAGAC
ATGCAGCTGCCAAGATTTTCAGCCATTCTGATGTTGTGGCTGAAGAACCA
TGGGTATGGTATTGAGCAGGAATACACCTTACTGGCAGAAGGATGTTAAA
TGGCCCTCTTGGCTGGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCA
TACNTACNNGGGGGGGGTTGGTGCTGACAAAGNCTTGGGGGCGTGACATT
GTGGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGG
A
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