CF417176

Overview
NameCF417176
Unique NameCF417176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417176 vs. ExPASy Swiss-Prot
Match: TCMO_PETCR (Trans-cinnamate 4-monooxygenase OS=Petroselinum crispum GN=CYP73A10 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.900e-36
Identity = 74/107 (69.16%), Postives = 76/107 (71.03%), Query Frame = 3
Query:    3 VNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRS 323
            VNAWWLANNPA W K             SKVEANGNDF+Y+PFGVGRRSCP              RLVQNFELLPPPGQSKIDTAEKGGQFSL ILKHSTIV KPRS
Sbjct:  399 VNAWWLANNPAHWNKPDEFRPERFLEEESKVEANGNDFKYIPFGVGRRSCPGIILALPILGIVIGRLVQNFELLPPPGQSKIDTAEKGGQFSLQILKHSTIVCKPRS 505          
BLAST of CF417176 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.240e-36
Identity = 74/108 (68.52%), Postives = 78/108 (72.22%), Query Frame = 3
Query:    3 VNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRSF 326
            VNAW+LANNP  WKK             SKVEANGNDFRYLPFGVGRRSCP              RLVQNFELLPPPG+SKIDT+EKGGQFSLHILKHSTIV KPR+F
Sbjct:  398 VNAWFLANNPEHWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGKSKIDTSEKGGQFSLHILKHSTIVLKPRTF 505          
BLAST of CF417176 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.778e-34
Identity = 71/107 (66.36%), Postives = 74/107 (69.16%), Query Frame = 3
Query:    3 VNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRS 323
            VNAWWLANNPA WK              S VEANGNDFRY+PFGVGRRSCP              R+VQNFELLPPPGQSKIDT+EKGGQFSL IL HSTIV KPRS
Sbjct:  398 VNAWWLANNPAHWKDPQVFRPERFLEEESGVEANGNDFRYIPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKIDTSEKGGQFSLFILNHSTIVLKPRS 504          
BLAST of CF417176 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.322e-34
Identity = 69/107 (64.49%), Postives = 74/107 (69.16%), Query Frame = 3
Query:    3 VNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRS 323
            VNAWWLANNP  WKK             S VEANGNDFRY+PFGVGRRSCP              R+VQNFELLPPPGQSK+DT+EKGGQFSLHIL HS IV KPR+
Sbjct:  398 VNAWWLANNPNSWKKPEEFRPERFFEEESHVEANGNDFRYVPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKVDTSEKGGQFSLHILNHSIIVMKPRN 504          
The following BLAST results are available for this feature:
BLAST of CF417176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TCMO_PETCR1.900e-3669.16Trans-cinnamate 4-monooxygenase OS=Petroselinum cr... [more]
TCMO_CATRO3.240e-3668.52Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
TCMO_RUTGR1.778e-3466.36Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]
TCMO_ARATH2.322e-3464.49Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-106 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_C7 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417176 ID=CF417176; Name=CF417176; organism=Citrus sinensis; type=EST; length=474bp
TAGTGAACGCGTGGTGGCTCGCCAACAATCCCGCCCAATGGAAGAAACCT
GAAGAATTCAGGCCTGAGAGGTTTTTGGAGGAGGAGTCCAAGGTTGAGGC
TAATGGAAATGACTTCCGTTACCTTCCTTTCGGTGTTGGAAGAAGAAGCT
GCCCTGGAATTATCCTTGCTTTGCCAATTCTTGGTATCACTATTGGGCGT
TTGGTACAGAACTTTGAGCTCTTGCCTCCTCCAGGTCAATCTAAGATTGA
CACTGCAGAGAAAGGTGGGCAGTTCAGTTTGCACATTTTGAAGCACTCGA
CCATTGTTGCCAAGCCTAGATCATTCTAGTTTCACAATTCCATTTGGTTG
TAATGTTAAGACTGTTTCAAAGTGGTTGAATGGTTTCTTCAATGTCGGAT
CAAATCAAGTGGCAGTTGGCTAGTTATGTAATACTTGTGTAAATTTGTGA
ACTTAAATCTTCAAATCTTCATTT
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