CF417248

Overview
NameCF417248
Unique NameCF417248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.096e-54
Identity = 102/116 (87.93%), Postives = 107/116 (92.24%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKEK HIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA E+ K SFKYAWVLDKLKAERERGITIDIALWKFET +Y  TVIDAPGHRDFIKNMITGTSQADCA+LII
Sbjct:    1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILII 116          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.432e-54
Identity = 102/117 (87.18%), Postives = 109/117 (93.16%), Query Frame = 1
Query:   58 MGK-EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGK +KTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDIALWKFET ++Y T+IDAPGHRDFIKNMITGTSQADCAVL++
Sbjct:    1 MGKGDKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKFYVTIIDAPGHRDFIKNMITGTSQADCAVLVV 117          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.870e-54
Identity = 101/116 (87.07%), Postives = 107/116 (92.24%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWK ET +Y  TVIDAPGHRDFIKNMITGTSQADCA+LII
Sbjct:    1 MGKEKAHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKSETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILII 116          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.442e-54
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKEKTHIN+VVIGHVDSGKSTTTGHLIYKLGGIDKR IE+FEKE++EM K SFKYAWVLDKLKAERERGITIDIALW+FET +Y+ TVIDAPGHRDFIKNMITGTSQAD A+L++
Sbjct:    1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESSEMGKGSFKYAWVLDKLKAERERGITIDIALWQFETPKYHYTVIDAPGHRDFIKNMITGTSQADVALLVV 116          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 3.189e-54
Identity = 102/117 (87.18%), Postives = 109/117 (93.16%), Query Frame = 1
Query:   58 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKE KTHIN+VVIGHVDSGKSTTTGHLIYK GGID R IE+FEKEA E+ K+SFKYAWVLDKLKAERERGITIDIALWKFET +Y+ TVIDAPGHRDFIKNMITGTSQADCA+LII
Sbjct:    1 MGKEEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDNRTIEKFEKEAEELGKKSFKYAWVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILII 117          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.583e-53
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            M KEKTHINIVVIGHVDSGKSTTTGHLIYK GGID+R IE+FEKE+AEM K SFKYAWVLD LKAERERGITIDI+LWKFET++YY T+IDAPGHRDFIKNMITGTSQAD A+LI+
Sbjct:    1 MPKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKESAEMGKGSFKYAWVLDNLKAERERGITIDISLWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADVAILIV 116          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.067e-53
Identity = 101/117 (86.32%), Postives = 108/117 (92.31%), Query Frame = 1
Query:   58 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 405
            MGKE KTHIN+VVIGHVDSGKSTTTGHLIYK GGID R IE+FEKEA E+ K+SFKYAWVLDKLK+ERERGITIDIALWKFET +Y  TVIDAPGHRDFIKNMITGTSQADCA+LII
Sbjct:    1 MGKEDKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDSRTIEKFEKEAEELGKKSFKYAWVLDKLKSERERGITIDIALWKFETPKYSVTVIDAPGHRDFIKNMITGTSQADCAILII 117          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.700e-53
Identity = 102/119 (85.71%), Postives = 110/119 (92.44%), Query Frame = 1
Query:   58 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKE K HINIVVIGHVDSGKSTTTGHLIYK GGID+R IE+FEKEAAE+ K SFKYAWVLDKLK+ERERGITIDIALWKF+T++Y  TVIDAPGHRDFIKNMITGTSQADCA+LII S
Sbjct:    1 MGKEDKQHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLKSERERGITIDIALWKFQTSKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIAS 119          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.605e-53
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 1
Query:   64 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            K K HINIVVIGHVDSGKST+TGH+IYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDIALWKFETT+Y  T+IDAPGHRDFIKNMITGTSQADCAVLI+ S
Sbjct:    4 KVKPHINIVVIGHVDSGKSTSTGHMIYKCGGIDKRQIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETTKYVVTIIDAPGHRDFIKNMITGTSQADCAVLIVAS 119          
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.605e-53
Identity = 100/118 (84.75%), Postives = 107/118 (90.68%), Query Frame = 1
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYKLGGID R IE+FEKE+AEM K SFKYAWVLDKLKAERERGITIDIALWKFET   + T+IDAPGHRDFIKNMITGTSQAD A+LII S
Sbjct:    1 MGKEKEHLNLVVIGHVDSGKSTTTGHLIYKLGGIDARTIEKFEKESAEMGKASFKYAWVLDKLKAERERGITIDIALWKFETENRHYTIIDAPGHRDFIKNMITGTSQADAAILIIAS 118          
The following BLAST results are available for this feature:
BLAST of CF417248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A2_SCHPO1.096e-5487.93Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A3_OSCTI1.432e-5487.18Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_PIRIN1.870e-5487.07Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_CRYPV2.442e-5486.21Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_COCIM3.189e-5487.18Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_ENTHI1.583e-5385.34Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_AJECG2.067e-5386.32Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_ASPOR2.700e-5385.71Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_HYDAT4.605e-5386.21Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A1_EUPCR4.605e-5384.75Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-178 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417248 ID=CF417248; Name=CF417248; organism=Citrus sinensis; type=EST; length=419bp
GCGAGAGAGAAACCTTTTAGCAAATTTCATATCAAGGTTTTATACTAGAT
TTGCATAATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCC
ATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTT
GGTGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAAGCTGCTGA
GATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGG
CTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAG
ACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGTGACTT
TATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTCA
TCATTGACTCCCCCCCCGG
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