CF417310

Overview
NameCF417310
Unique NameCF417310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.043e-19
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+++AAYLL  LGGN +PS+ADV+ +L SVGIEAD+++L K+ISEL+GK++ ELIASG EKL+S+P GG
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA4_SCHPO (60S acidic ribosomal protein P2-beta OS=Schizosaccharomyces pombe GN=rpp202 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.015e-18
Identity = 41/69 (59.42%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+Y+AAYLL  +GG  +PS++D+E +LS+VGIEA+AE+++ +ISEL GKN+EELIA+G EKLS++P  G
Sbjct:    1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_PODAN (60S acidic ribosomal protein P2 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.655e-18
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+++AAYLL  LGG A PS+ADV+ +L SVGIEAD+++L K+ISEL+GK+V ELIA G  KL+S+P GG
Sbjct:    1 MKHLAAYLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_FUSCU (60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.655e-18
Identity = 41/69 (59.42%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+++AAYLL  LGGN +PS+ADV+ +L+SVGI+AD ++L K+ISEL+GK++++LIA G EKL+S+P GG
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.227e-17
Identity = 42/69 (60.87%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+ +AAYLLAVLGGN +P++ DV+ IL SVG EAD EKL+ +++ELK K++ E+IA+GRE+LSS+P GG
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERLSSVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.227e-17
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 343
            M++VAAYLLAVL GNA+PS+ D+  IL SVG E D EK++ ++S+L GK++ ELIA+GREK +S+P GG                                   DMGF LFD
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKFASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_SCHPO (60S acidic ribosomal protein P2-alpha OS=Schizosaccharomyces pombe GN=rpp201 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.909e-17
Identity = 37/69 (53.62%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+Y+AAYLL  +GG  +PS++D+E +LS+VGIEA++E+++ +I+EL GK+++ELIA+G EKL+++P GG
Sbjct:    1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_ASPFU (60S acidic ribosomal protein P2 OS=Aspergillus fumigatus GN=AFUA_2G10100 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.962e-17
Identity = 41/69 (59.42%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+++AAYLL  L GN +PSS DV+ +LSSVGI+AD E+L K+I+EL+GK+++ELIA G  KL+S+P GG
Sbjct:    1 MKHLAAYLLLALAGNTSPSSEDVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_CANAL (60S acidic ribosomal protein P2-A OS=Candida albicans GN=RPP2A PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.481e-17
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVG 211
            M+Y+AAYLL V  GNA PS+ADV+ +LS+  IE + EK++K+ISE  GKNVEELIA G EKLSS+P G
Sbjct:    1 MKYLAAYLLLVNAGNATPSAADVKAVLSAADIEVEEEKVEKLISESDGKNVEELIAEGNEKLSSVPSG 68          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA6_SCHPO (60S acidic ribosomal protein P2-C OS=Schizosaccharomyces pombe GN=rpp203 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.463e-16
Identity = 36/69 (52.17%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+Y+AAYLL  +GG  +PS++D+E +LS+VGIE+++E+++ +I EL GK+++ELIA+G EKL+++P GG
Sbjct:    1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGG 69          
The following BLAST results are available for this feature:
BLAST of CF417310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RLA2_ALTAL9.043e-1963.7760S acidic ribosomal protein P2 OS=Alternaria alte... [more]
RLA4_SCHPO2.015e-1859.4260S acidic ribosomal protein P2-beta OS=Schizosacc... [more]
RLA2_PODAN7.655e-1862.3260S acidic ribosomal protein P2 OS=Podospora anser... [more]
RLA2_FUSCU7.655e-1859.4260S acidic ribosomal protein P2 OS=Fusarium culmor... [more]
RLA2B_MAIZE2.227e-1760.8760S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA2A_MAIZE2.227e-1742.8660S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA2_SCHPO2.909e-1753.6260S acidic ribosomal protein P2-alpha OS=Schizosac... [more]
RLA2_ASPFU4.962e-1759.4260S acidic ribosomal protein P2 OS=Aspergillus fum... [more]
RLA2_CANAL6.481e-1763.2460S acidic ribosomal protein P2-A OS=Candida albic... [more]
RLA6_SCHPO2.463e-1652.1760S acidic ribosomal protein P2-C OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-240 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417310 ID=CF417310; Name=CF417310; organism=Citrus sinensis; type=EST; length=450bp
TAAAAAAATGCGTTACGTGGCCGCGTACCTGTTAGCCGTCCTCGGAGGCA
ATGCCGCTCCTTCCTCAGCTGATGTTGAGAAGATCTTGAGCTCAGTAGGT
ATTGAGGCTGATGCTGAGAAGCTAAAGAAAGTCATCTCTGAGCTCAAGGG
CAAGAATGTTGAGGAATTGATTGCTTCAGGCCGTGAGAAGCTCTCCTCCA
TGCCAGTTGGTGGTGGTGCCCCTGCTGCTGCAGCTGGAGCACCGGCCGCT
GCTGCCGCTGAAGAAAAGAAGGAAGACAAAAAGGAGGCCAAGAAAGAAGA
ATCTGAATCAGAAGATGAGGATATGGGCTTCGGTCTCTTCGATTAAGTTA
CTTTATGAAGTGGATGTCTCGCGGGTCGTGTCGTCTATTGCATTTTGTAC
TGTAAGGATAATTTAGCAAGTATGTTTCTATGAAATATATTTGTTTTAAT
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