CF417310

Overview
NameCF417310
Unique NameCF417310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_CLAHE (60S acidic ribosomal protein P2 OS=Cladosporium herbarum GN=CLAH5 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.463e-16
Identity = 38/69 (55.07%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+Y+AA+LL  L GN++PS+ D++ +LSSVGI+AD E+L  ++ EL+GK++ ELI+SG EKL+S+P GG
Sbjct:    1 MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.216e-16
Identity = 37/69 (53.62%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+ +AA+LLA+LGGN +P+  D++ IL+SVG +AD +K++ ++S++KGK++ ELIASGRE+L+S+P GG
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15
Identity = 39/69 (56.52%), Postives = 56/69 (81.16%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+ VAAYLLAVL G A+P+SAD++ IL SVG E +  +++ ++ E+KGK++ ELIA+GREKL+S+P GG
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA4_CANAL (60S acidic ribosomal protein P2-B OS=Candida albicans GN=RPP2B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 35/69 (50.72%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+Y+AAYLL V GGN +PS++D+  +L SVG+EA+  +L+ ++ +L+GK+++ELIA G  KL+S+P GG
Sbjct:    1 MKYLAAYLLLVQGGNTSPSASDITALLESVGVEAEESRLQALLKDLEGKDLQELIAEGNTKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_CAEEL (60S acidic ribosomal protein P2 OS=Caenorhabditis elegans GN=rpa-2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+Y+ AYLLA LGGNA+PS+ DV K+L + G++ D E    V+  LKGK + E+IA G+ KLSS+P GG
Sbjct:    1 MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLSSVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.035e-14
Identity = 36/69 (52.17%), Postives = 54/69 (78.26%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+  AA+LLAVLGGNA PS+ +++ I+ +VG + D E ++ ++ E+ GK++ ELIASGREKL+S+P GG
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_RHOGU (60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.351e-14
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M++VAAYLL V  GN +PS+ DV+K+L++  I+AD E+L  +I EL+GK+V E+IA G +KL+S+P GG
Sbjct:    1 MKHVAAYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 36/69 (52.17%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+ VAA+LLAVL G A+P++ D++ IL SVG E +  +++ ++ E+KGK++ ELIA+GREKL+S+P GG
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGG 69          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA4_YEAST (60S acidic ribosomal protein P2-beta OS=Saccharomyces cerevisiae GN=RPP2B PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 35/70 (50.00%), Postives = 56/70 (80.00%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGK-NVEELIASGREKLSSMPVGG 214
            M+Y+AAYLL V GGNAAPS+AD++ ++ SVG E D  ++ +++S L+GK ++EE+IA G++K +++P GG
Sbjct:    1 MKYLAAYLLLVQGGNAAPSAADIKAVVESVGAEVDEARINELLSSLEGKGSLEEIIAEGQKKFATVPTGG 70          
BLAST of CF417310 vs. ExPASy Swiss-Prot
Match: RLA2_EIMTE (60S acidic ribosomal protein P2 OS=Eimeria tenella PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    8 MRYVAAYLLAVLGGNAAPSSADVEKILSSVGIEADAEKLKKVISELKGKNVEELIASGREKLSSMPVGG 214
            M+YVAAYL+ VLGGN AP++ADV ++L  VG E + E LK +I  ++GK   E+I++G EKL  +P GG
Sbjct:    1 MKYVAAYLMTVLGGNEAPTAADVSRVLEPVGAEVNPEVLKTLIDAMQGKAAHEVISAGLEKLQKVPCGG 69          
The following BLAST results are available for this feature:
BLAST of CF417310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RLA2_CLAHE2.463e-1655.0760S acidic ribosomal protein P2 OS=Cladosporium he... [more]
RLA2_PARAR3.216e-1653.6260S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA22_ARATH1.222e-1556.5260S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA4_CANAL4.644e-1550.7260S acidic ribosomal protein P2-B OS=Candida albic... [more]
RLA2_CAEEL4.644e-1553.6260S acidic ribosomal protein P2 OS=Caenorhabditis ... [more]
RLA24_ARATH1.035e-1452.1760S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA2_RHOGU1.351e-1453.6260S acidic ribosomal protein P2 OS=Rhodotorula glu... [more]
RLA21_ARATH2.305e-1452.1760S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA4_YEAST3.010e-1450.0060S acidic ribosomal protein P2-beta OS=Saccharomy... [more]
RLA2_EIMTE3.010e-1452.1760S acidic ribosomal protein P2 OS=Eimeria tenella... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-240 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417310 ID=CF417310; Name=CF417310; organism=Citrus sinensis; type=EST; length=450bp
TAAAAAAATGCGTTACGTGGCCGCGTACCTGTTAGCCGTCCTCGGAGGCA
ATGCCGCTCCTTCCTCAGCTGATGTTGAGAAGATCTTGAGCTCAGTAGGT
ATTGAGGCTGATGCTGAGAAGCTAAAGAAAGTCATCTCTGAGCTCAAGGG
CAAGAATGTTGAGGAATTGATTGCTTCAGGCCGTGAGAAGCTCTCCTCCA
TGCCAGTTGGTGGTGGTGCCCCTGCTGCTGCAGCTGGAGCACCGGCCGCT
GCTGCCGCTGAAGAAAAGAAGGAAGACAAAAAGGAGGCCAAGAAAGAAGA
ATCTGAATCAGAAGATGAGGATATGGGCTTCGGTCTCTTCGATTAAGTTA
CTTTATGAAGTGGATGTCTCGCGGGTCGTGTCGTCTATTGCATTTTGTAC
TGTAAGGATAATTTAGCAAGTATGTTTCTATGAAATATATTTGTTTTAAT
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