CF417320

Overview
NameCF417320
Unique NameCF417320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.857e-50
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  324 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            VEGVVTL+QED GPTTV VR+TGLTPG HGFHLHE+GDTTNGCMSTG+HFNP  +THGAP+D+VRHAGDLGNIVA ++GVAEATIVDNQI
Sbjct:    2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQI 91

HSP 2 Score: 53.1434 bits (126), Expect = 6.857e-50
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GP++V+GRA V HELEDDLGKGGHELSL
Sbjct:   95 GPDSVIGRALVVHELEDDLGKGGHELSL 122
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.943e-36
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L G+  V GV+  TQE+ GPTTV  +++GL PG HGFH+H  GDTTNGC+STG H+NP N  HGAP+DE RHAGDLGN+    +G AE TIVD QI
Sbjct:    8 LSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQI 103

HSP 2 Score: 39.6614 bits (91), Expect = 1.943e-36
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G  +++GRA V H   DDLGKGGHELS
Sbjct:  107 GSGSIIGRAVVVHADPDDLGKGGHELS 133
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.531e-36
Identity = 59/96 (61.46%), Postives = 66/96 (68.75%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L  +  V G +  TQE  GPTTV   V+GL PGPHGFH+H  GDTTNGC+STG HFNP    HGAP DEVRHAGDLGN+    +G A  TIVD QI
Sbjct:    8 LSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQI 103

HSP 2 Score: 43.1282 bits (100), Expect = 2.531e-36
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GP++++GRA V H   DDLGKGGHELS
Sbjct:  107 GPHSIIGRAVVVHADPDDLGKGGHELS 133
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.595e-36
Identity = 59/96 (61.46%), Postives = 66/96 (68.75%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L  +  V G V  TQE  GPTTV   V+GL PG HGFH+H  GDTTNGCMSTG HFNP    HGAP+DE RHAGDLGNI    +G A  TI+D+QI
Sbjct:    8 LSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQI 103

HSP 2 Score: 44.2838 bits (103), Expect = 5.595e-36
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GPN++VGRA V H   DDLG+GGHELS
Sbjct:  107 GPNSIVGRAVVVHADPDDLGRGGHELS 133
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.595e-36
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L  +  V G V   QE  GPTTV   V+GL PG HGFH+H  GDTTNGCMSTG H+NPN   HGAP+D+VRHAGDLGNI    +G A  TI+D+QI
Sbjct:    8 LSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQI 103

HSP 2 Score: 44.669 bits (104), Expect = 5.595e-36
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GPN++VGRA V H   DDLG+GGHELS
Sbjct:  107 GPNSIVGRAVVVHAEPDDLGRGGHELS 133
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.284e-36
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L G ++V+GVV  TQE  GPTTV  +++GL+PG HGFH+H  GDTTNGCMSTG HFNP    HGAP D+ RHAGDLGN+    +G  E +I D+QI
Sbjct:   10 LNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQI 105

HSP 2 Score: 43.5134 bits (101), Expect = 7.284e-36
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GP+++VGRA V H   DDLGKGGHELS
Sbjct:  109 GPHSIVGRAVVVHADPDDLGKGGHELS 135
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 9.495e-36
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L  +  V+G +  TQE  GPTTV   V+GL PG HGFH+H  GDTTNGCMSTG H+NP +  HGAP+DE RHAGDLGN+ A A+GVA   + D+QI
Sbjct:    8 LGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQI 103

HSP 2 Score: 45.0542 bits (105), Expect = 9.495e-36
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GPN+++GRA V H   DDLGKGGHELS
Sbjct:  107 GPNSIIGRAVVVHADPDDLGKGGHELS 133
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.734e-35
Identity = 57/96 (59.38%), Postives = 65/96 (67.71%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L  +  V+G +  TQE  G TTV   V+GL PG HGFH+H  GDTTNGCMSTG HFNP   THGAP+D  RHAGDLGNI    +G A  TI D+QI
Sbjct:    8 LNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQI 103

HSP 2 Score: 47.3654 bits (111), Expect = 2.734e-35
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GPN++VGRA V H   DDLGKGGHELSL
Sbjct:  107 GPNSIVGRAVVVHAEPDDLGKGGHELSL 134
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.561e-35
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L  +  V+G +  TQE  GPT V   V+GL PG HGFH+H  GDTTNGCMSTG H+NP +  HGAP+DE RHAGDLGN+ A A+GVA   + D+QI
Sbjct:    8 LGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQI 103

HSP 2 Score: 45.0542 bits (105), Expect = 3.561e-35
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GPN+++GRA V H   DDLGKGGHELS
Sbjct:  107 GPNSIIGRAVVVHADPDDLGKGGHELS 133
[Close]
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.043e-35
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 3 
Query:  306 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L  +  V G +  TQE  GPTTV   + GL PG HGFH+H  GDTTNGC+STGAHFNPNN  HGAP+DE RHAGDLGN+    +G    +I D+QI
Sbjct:    8 LGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQI 103

HSP 2 Score: 45.4394 bits (106), Expect = 6.043e-35
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GPN+++GRA V H   DDLGKGGHELS
Sbjct:  107 GPNSIIGRAVVVHADSDDLGKGGHELS 133
The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
SODCP_PINSY6.857e-5083.33Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC_PANGI1.943e-3661.46Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC_PAUKA2.531e-3661.46Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC1_MESCR5.595e-3661.46Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_SPIOL5.595e-3660.42Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PINSY7.284e-3659.38Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC4_MAIZE9.495e-3659.38Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC1_BRAJU2.734e-3559.38Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC5_MAIZE3.561e-3558.33Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_SOYBN6.043e-3558.33Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-250 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bp
GTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAGCC
GCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCTTC
ATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCGCT
CTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCCAC
GGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCCGT
GGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGTGG
CTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCCAA
GAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACTCC
TGGGCCTCACGGGTTCCACCTACACGAATATGGTGATACGACAAATGGGT
GTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTGCT
CCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCTAA
CGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACTGG
NATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGNTCATGAGCTTGA
GGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAAC
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