CF417320

Overview
NameCF417320
Unique NameCF417320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_ASPNC (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sodC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.989e-22
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            ++G S V G VT  Q  +  PTT++  +TG       GFH+H++GD TNGC S G HFNP   THGAP+D+ RH GDLGN   +A G A  +  D  +
Sbjct:    8 IRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPFGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLV 105          

HSP 2 Score: 31.5722 bits (70), Expect = 6.989e-22
Identity = 14/27 (51.85%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G  +V+GR  V H   DDLG+GG+E S
Sbjct:  109 GAESVLGRTLVVHAGTDDLGRGGNEES 135          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 9.094e-22
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVD 584
            L+G S V GVV   Q  +  PTT+   ++G       GFH+H +GD TNGC S G HFNP    HGAP+D+ RH GDLGN+  + +GVA+ +  D
Sbjct:    8 LRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQD 102          

HSP 2 Score: 31.9574 bits (71), Expect = 9.094e-22
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGH 675
            G N+++GR  V H   DDLGKGG+
Sbjct:  109 GQNSILGRTVVIHAGTDDLGKGGN 132          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_PAESI (Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinensis GN=SOD1 PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.183e-21
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGL-TPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L+G S + G+V   QE D  PTT++  ++        GFH+  +GD TNGC S G HFNP+  THG   DE RH GD+GNI  + +G ++ +I D  I
Sbjct:    8 LRGDSKITGIVNFEQESDSSPTTISWEISNHDADAKRGFHITPFGDNTNGCTSAGPHFNPHGKTHGNVTDENRHVGDMGNIETDCDGNSKGSIKDKLI 105          

HSP 2 Score: 36.965 bits (84), Expect = 1.183e-21
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GP++V+GR  V H   DDLGKGG++ SL
Sbjct:  109 GPHSVIGRTVVIHAGTDDLGKGGNDESL 136          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.712e-21
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQED-GGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L+G S V GVVT  Q D     +V V + G       GFH+H++GD TNGC S G HFNP   THG     VRH GDLGN+ ++A G  + T  D+ I
Sbjct:    8 LRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVI 105          

HSP 2 Score: 35.4242 bits (80), Expect = 9.712e-21
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            G N+++GR  V H  EDDLGKG  E SL
Sbjct:  109 GANSIIGRTIVIHAGEDDLGKGTSEESL 136          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROOB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila obscura GN=Sod PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            + +G V   QE    P  V   V GLT G HGFH+HE+GD TNGCMS+G HFNP +  HGAP DE RH GDLGNI A  +     +I D++I
Sbjct:    4 DAKGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGDNTNGCMSSGPHFNPRSKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKI 95          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            + +G+V   QE    P  V   V GL  G HGFH+HE+GD TNGCMS+G H+NP N  HGAP DE RH GDLGNI A  +     +I D++I
Sbjct:    4 DAKGIVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHYNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKI 95          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODE_CAEEL (Extracellular superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-4 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.108e-20
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  351 EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDN 587
            + G    +N  V+GL  G HGFH+HE GDT NGC+S G H+NP+ ++HGAP D  RH GDLGNI + A+G    ++ D+
Sbjct:   48 QSGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDS 126          

HSP 2 Score: 29.6462 bits (65), Expect = 2.108e-20
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            G  +++GR+ V HE  DDLG+G  + S
Sbjct:  132 GQYSIIGRSVVIHEKTDDLGRGTSDQS 158          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 3.618e-20
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  306 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            L+G S + G VT  Q D   PTTV+  +TG        FH+H++GD TNGC S G HFNP    HGAP+DE RH GDLGN   +A G A  +  D  I
Sbjct:    8 LRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLI 105          

HSP 2 Score: 26.5646 bits (57), Expect = 3.618e-20
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGH 675
            G  +V+GR  V H   DDLG+  H
Sbjct:  109 GAESVLGRTLVIHAGTDDLGRSEH 132          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROTO (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila tolteca GN=Sod PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            + +G V   QE    P  V   V GLT G HGFH+HE+G+ TNGCMS+G HFNP N  HGAP D  RH GDLGNI A  +     +I D++I
Sbjct:    4 DAKGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGNNTNGCMSSGPHFNPGNKEHGAPTDGNRHLGDLGNIQAAGDSPTAVSITDSKI 95          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  321 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            + +G V   QE    P  V     GL  G HGFH+HE+GD TNGCMS+G HFNP N  HGAP DE RH GDLGNI A  +     +I D++I
Sbjct:    4 DAKGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKI 95          
The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
SODC_ASPNC6.989e-2245.92Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC1_DEBHA9.094e-2246.32Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_PAESI1.183e-2142.86Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinen... [more]
SODC_SCHPO9.712e-2145.92Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyce... [more]
SODC_DROOB1.137e-2052.17Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMD1.137e-2051.09Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODE_CAEEL2.108e-2049.37Extracellular superoxide dismutase [Cu-Zn] OS=Caen... [more]
SODC_ASPOR3.618e-2047.96Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
SODC_DROTO7.368e-2051.09Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROPE7.368e-2051.09Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-250 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bp
GTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAGCC
GCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCTTC
ATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCGCT
CTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCCAC
GGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCCGT
GGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGTGG
CTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCCAA
GAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACTCC
TGGGCCTCACGGGTTCCACCTACACGAATATGGTGATACGACAAATGGGT
GTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTGCT
CCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCTAA
CGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACTGG
NATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGNTCATGAGCTTGA
GGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAAC
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